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1M72
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CASPASE-1 FROM SPODOPTERA FRUGIPERDA
Authors
:
C. M. Forsyth, D. Lemongello, P. D. Friesen, A. J. Fisher
Date
:
18 Jul 02 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,D,E (1x)
Biol. Unit 2: C,F (2x)
Keywords
:
Caspase, Cysteine Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Reference
:
C. M. Forsyth, D. Lemongello, D. J. Lacount, P. D. Friesen, A. J. Fisher
Crystal Structure Of An Invertebrate Caspase.
J. Biol. Chem. V. 279 7001 2004
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLOROMETHANE (0QEa)
1b: CHLOROMETHANE (0QEb)
1c: CHLOROMETHANE (0QEc)
2a: ACETYL GROUP (ACEa)
2b: ACETYL GROUP (ACEb)
2c: ACETYL GROUP (ACEc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
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No.
Name
Count
Type
Full Name
1
0QE
2
Mod. Amino Acid
CHLOROMETHANE
2
ACE
2
Mod. Amino Acid
ACETYL GROUP
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:184 , THR A:216 , VAL A:217 , TYR A:220 , GLN A:279 , VAL A:280 , HIS B:207
BINDING SITE FOR RESIDUE EDO A 506
2
AC2
SOFTWARE
PRO B:45 , VAL B:46 , TYR B:53 , ASN B:54 , HIS B:57 , ASP B:127 , GLY B:168 , LYS B:169 , PRO B:170
BINDING SITE FOR RESIDUE EDO B 503
3
AC3
SOFTWARE
HIS A:207 , ASP B:184 , THR B:216 , VAL B:217 , GLN B:279 , VAL B:280
BINDING SITE FOR RESIDUE EDO B 507
4
AC8
SOFTWARE
LYS A:77 , ARG A:79 , THR A:135 , HIS A:136 , GLY A:137 , GLN A:176 , CYS A:178 , PHE A:221 , SER A:222 , TRP A:223 , ARG A:224 , ASN A:225 , THR A:226 , SER A:266 , ASN A:267 , MET A:274 , HIS B:74 , HOH D:1050
BINDING SITE FOR CHAIN D OF ACE-ASP-GLU-VAL-ASP- CHLOROMETHYLKETONE
5
AC9
SOFTWARE
HIS A:74 , ARG B:79 , THR B:135 , HIS B:136 , GLY B:137 , GLN B:176 , CYS B:178 , PHE B:221 , SER B:222 , TRP B:223 , ARG B:224 , ASN B:225 , THR B:226 , SER B:266 , ASN B:267 , MET B:274 , HOH E:1013 , HOH E:1173
BINDING SITE FOR CHAIN E OF ACE-ASP-GLU-VAL-ASP- CHLOROMETHYLKETONE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:59-182,B:59-182)
2: CASPASE_HIS (A:123-137,B:123-137)
3: CASPASE_CYS (A:169-180,B:169-180)
4: CASPASE_P10 (A:201-295,B:200-295)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP1_SPOFR
59-182
2
A:59-182
B:59-182
-
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP1_SPOFR
123-137
2
A:123-137
B:123-137
-
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP1_SPOFR
169-180
2
A:169-180
B:169-180
-
4
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP1_SPOFR
200-295
2
A:201-295
B:200-295
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1m72a_ (A:)
1b: SCOP_d1m72b_ (B:)
1c: SCOP_d1m72c_ (C:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Caspase-1
(1)
Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]
(1)
1a
d1m72a_
A:
1b
d1m72b_
B:
1c
d1m72c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1m72A00 (A:40-295)
1b: CATH_1m72B00 (B:41-296)
1c: CATH_1m72C00 (C:40-300)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Fall armyworm (Spodoptera frugiperda)
(2)
1a
1m72A00
A:40-295
1b
1m72B00
B:41-296
1c
1m72C00
C:40-300
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_1m72C01 (C:61-293)
1b: PFAM_Peptidase_C14_1m72C02 (C:61-293)
1c: PFAM_Peptidase_C14_1m72C03 (C:61-293)
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Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Spodoptera frugiperda (Fall armyworm)
(2)
1a
Peptidase_C14-1m72C01
C:61-293
1b
Peptidase_C14-1m72C02
C:61-293
1c
Peptidase_C14-1m72C03
C:61-293
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Asymmetric Unit 1
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
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