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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1M6D
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CATHEPSIN F
Authors
:
J. R. Somoza, J. T. Palmer, J. D. Ho
Date
:
15 Jul 02 (Deposition) - 15 Jul 03 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Papain Family Cysteine Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Somoza, J. T. Palmer, J. D. Ho
The Crystal Structure Of Human Cathepsin F And Its Implications For The Development Of Novel Immunomodulators
J. Mol. Biol. V. 322 559 2002
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 4-MORPHOLIN-4-YL-PIPERIDINE-1-CARB... (MYPa)
1b: 4-MORPHOLIN-4-YL-PIPERIDINE-1-CARB... (MYPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MYP
2
Ligand/Ion
4-MORPHOLIN-4-YL-PIPERIDINE-1-CARBOXYLIC ACID [1-(3-BENZENESULFONYL-1-PROPYL-ALLYLCARBAMOYL)-2-PHENYLETHYL]-AMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:19 , GLY A:23 , CYS A:25 , TRP A:26 , GLY A:65 , GLY A:66 , LEU A:67 , GLN A:142 , LEU A:152B , SER A:154 , PRO A:156A , LEU A:156B , ILE A:157 , ASP A:158 , HIS A:159 , TRP A:177 , HOH A:1302 , HOH A:1312 , TRP B:156 , PRO B:156A , HOH B:2292
BINDING SITE FOR RESIDUE MYP A 1280
2
AC2
SOFTWARE
SER A:73 , ASN A:78 , GLN B:19 , GLY B:23 , CYS B:25 , TRP B:26 , MET B:64 , GLY B:65 , GLY B:66 , LEU B:67 , ALA B:133 , PHE B:143 , ILE B:157 , ASP B:158 , HIS B:159 , TRP B:177 , MET B:205 , HOH B:2365 , HOH B:2380 , HOH B:2399
BINDING SITE FOR RESIDUE MYP B 2280
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_070160 (Q51R, chain A/B, )
2: VAR_070161 (G182A, chain A/B, )
3: VAR_070162 (S208L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070160
Q
321
R
CATF_HUMAN
Disease (CLN13)
---
A/B
Q
51
R
2
UniProt
VAR_070161
G
458
A
CATF_HUMAN
Disease (CLN13)
---
A/B
G
182
A
3
UniProt
VAR_070162
S
480
L
CATF_HUMAN
Disease (CLN13)
---
A/B
S
208
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:19-30,B:19-30)
2: THIOL_PROTEASE_HIS (A:157-167,B:157-167)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATF_HUMAN
289-300
2
A:19-30
B:19-30
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATF_HUMAN
429-439
2
A:157-167
B:157-167
[
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]
Exons
(8, 16)
Info
All Exons
Exon 1.7a (A:1-19 | B:1-19)
Exon 1.8a (A:20-52 | B:20-52)
Exon 1.8c (A:52-78B (gaps) | B:52-78B (gaps))
Exon 1.9a (A:78B-119 (gaps) | B:78B-119 (gaps...)
Exon 1.9c (A:119-142 (gaps) | B:119-142 (gaps...)
Exon 1.10b (A:143-167B (gaps) | B:143-167B (ga...)
Exon 1.10e (A:167B-184 | B:167B-184)
Exon 1.11b (A:185-212 (gaps) | B:185-212 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.6b/1.7a
2: Boundary 1.7a/1.8a
3: Boundary 1.8a/1.8c
4: Boundary 1.8c/1.9a
5: Boundary 1.9a/1.9c
6: Boundary 1.9c/1.10b
7: Boundary 1.10b/1.10e
8: Boundary 1.10e/1.11b
9: Boundary 1.11b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000310325
2
ENSE00001188380
chr11:
66336067-66335745
323
CATF_HUMAN
1-71
71
0
-
-
1.3
ENST00000310325
3
ENSE00001188376
chr11:
66335553-66335455
99
CATF_HUMAN
72-104
33
0
-
-
1.4c
ENST00000310325
4c
ENSE00001188372
chr11:
66335133-66334915
219
CATF_HUMAN
105-177
73
0
-
-
1.5a
ENST00000310325
5a
ENSE00001233025
chr11:
66334792-66334717
76
CATF_HUMAN
178-203
26
0
-
-
1.6b
ENST00000310325
6b
ENSE00001188359
chr11:
66333875-66333762
114
CATF_HUMAN
203-241
39
0
-
-
1.7a
ENST00000310325
7a
ENSE00001188356
chr11:
66333638-66333493
146
CATF_HUMAN
241-289
49
2
A:1-19
B:1-19
19
19
1.8a
ENST00000310325
8a
ENSE00001188351
chr11:
66333398-66333302
97
CATF_HUMAN
290-322
33
2
A:20-52
B:20-52
33
33
1.8c
ENST00000310325
8c
ENSE00001188349
chr11:
66333222-66333142
81
CATF_HUMAN
322-349
28
2
A:52-78B (gaps)
B:52-78B (gaps)
29
29
1.9a
ENST00000310325
9a
ENSE00001188347
chr11:
66332477-66332358
120
CATF_HUMAN
349-389
41
2
A:78B-119 (gaps)
B:78B-119 (gaps)
43
43
1.9c
ENST00000310325
9c
ENSE00001188342
chr11:
66332277-66332213
65
CATF_HUMAN
389-410
22
2
A:119-142 (gaps)
B:119-142 (gaps)
24
24
1.10b
ENST00000310325
10b
ENSE00001233018
chr11:
66332119-66332029
91
CATF_HUMAN
411-441
31
2
A:143-167B (gaps)
B:143-167B (gaps)
33
33
1.10e
ENST00000310325
10e
ENSE00001188333
chr11:
66331617-66331559
59
CATF_HUMAN
441-460
20
2
A:167B-184
B:167B-184
20
20
1.11b
ENST00000310325
11b
ENSE00002162432
chr11:
66331478-66330934
545
CATF_HUMAN
461-484
24
2
A:185-212 (gaps)
B:185-212 (gaps)
28
28
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1m6da_ (A:)
1b: SCOP_d1m6db_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Cathepsin F
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1m6da_
A:
1b
d1m6db_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1m6dA00 (A:1-212)
1b: CATH_1m6dB00 (B:1-212)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
1m6dA00
A:1-212
1b
1m6dB00
B:1-212
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C1_1m6dB01 (B:1-210)
1b: PFAM_Peptidase_C1_1m6dB02 (B:1-210)
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Clans
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(
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(
)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Homo sapiens (Human)
(45)
1a
Peptidase_C1-1m6dB01
B:1-210
1b
Peptidase_C1-1m6dB02
B:1-210
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