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1M5Y
Asym. Unit
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Asym.Unit (229 KB)
Biol.Unit 1 (224 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF SURA, A MOLECULAR CHAPERONE THAT FACILITATES OUTER MEMBRANE PORIN FOLDING
Authors
:
E. Bitto, D. B. Mckay
Date
:
10 Jul 02 (Deposition) - 08 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Survival Protein A, Periplasmic Molecular Chaperone, Membrane Protein Folding, Gram Negative Bacteria, Crystal Structure, Isomerase, Cell Cycle
(Keyword Search:
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Reference
:
E. Bitto, D. B. Mckay
Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Folding Of Outer Membrane Porins
Structure V. 10 1489 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: PPIC_PPIASE_2 (A:172-272,B:172-272,C:172-272,D:17...)
2: PPIC_PPIASE_1 (A:212-232,B:212-232,C:212-232,D:21...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PPIC_PPIASE_2
PS50198
PpiC-type peptidyl-prolyl cis-trans isomerase family profile.
SURA_ECOLI
171-272
282-382
8
A:172-272
B:172-272
C:172-272
D:172-272
A:282-382
B:283-382
C:283-382
D:282-382
2
PPIC_PPIASE_1
PS01096
PpiC-type peptidyl-prolyl cis-trans isomerase signature.
SURA_ECOLI
212-232
321-342
8
A:212-232
B:212-232
C:212-232
D:212-232
A:321-342
B:321-342
C:321-342
D:321-342
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1m5ya1 (A:25-164,A:395-427)
1b: SCOP_d1m5yb1 (B:25-163,B:396-427)
1c: SCOP_d1m5yc1 (C:25-163,C:396-427)
1d: SCOP_d1m5yd1 (D:25-163,D:396-428)
2a: SCOP_d1m5ya2 (A:172-278)
2b: SCOP_d1m5yc3 (C:283-385)
2c: SCOP_d1m5yd2 (D:172-278)
2d: SCOP_d1m5yd3 (D:279-388)
2e: SCOP_d1m5ya3 (A:279-386)
2f: SCOP_d1m5yb2 (B:172-274)
2g: SCOP_d1m5yb3 (B:283-385)
2h: SCOP_d1m5yc2 (C:172-273)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Triger factor/SurA peptide-binding domain-like
(5)
Superfamily
:
Triger factor/SurA peptide-binding domain-like
(5)
Family
:
Porin chaperone SurA, peptide-binding domain
(2)
Protein domain
:
Porin chaperone SurA, peptide-binding domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1m5ya1
A:25-164,A:395-427
1b
d1m5yb1
B:25-163,B:396-427
1c
d1m5yc1
C:25-163,C:396-427
1d
d1m5yd1
D:25-163,D:396-428
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
Porin chaperone SurA, PPIase domains
(4)
Escherichia coli [TaxId: 562]
(4)
2a
d1m5ya2
A:172-278
2b
d1m5yc3
C:283-385
2c
d1m5yd2
D:172-278
2d
d1m5yd3
D:279-388
2e
d1m5ya3
A:279-386
2f
d1m5yb2
B:172-274
2g
d1m5yb3
B:283-385
2h
d1m5yc2
C:172-273
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1m5yA03 (A:280-386)
1b: CATH_1m5yB02 (B:163-274,B:396-420)
1c: CATH_1m5yD02 (D:163-276,D:396-420)
1d: CATH_1m5yA02 (A:163-276,A:396-420)
1e: CATH_1m5yD03 (D:280-386)
1f: CATH_1m5yB03 (B:283-385)
1g: CATH_1m5yC03 (C:283-385)
1h: CATH_1m5yC02 (C:163-273,C:396-420)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.40, no name defined]
(98)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1m5yA03
A:280-386
1b
1m5yB02
B:163-274,B:396-420
1c
1m5yD02
D:163-276,D:396-420
1d
1m5yA02
A:163-276,A:396-420
1e
1m5yD03
D:280-386
1f
1m5yB03
B:283-385
1g
1m5yC03
C:283-385
1h
1m5yC02
C:163-273,C:396-420
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Rotamase_1m5yD01 (D:289-382)
1b: PFAM_Rotamase_1m5yD02 (D:289-382)
1c: PFAM_Rotamase_1m5yD03 (D:289-382)
1d: PFAM_Rotamase_1m5yD04 (D:289-382)
1e: PFAM_Rotamase_1m5yD05 (D:289-382)
1f: PFAM_Rotamase_1m5yD06 (D:289-382)
1g: PFAM_Rotamase_1m5yD07 (D:289-382)
1h: PFAM_Rotamase_1m5yD08 (D:289-382)
2a: PFAM_SurA_N_1m5yD09 (D:25-142)
2b: PFAM_SurA_N_1m5yD10 (D:25-142)
2c: PFAM_SurA_N_1m5yD11 (D:25-142)
2d: PFAM_SurA_N_1m5yD12 (D:25-142)
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Organisms
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)
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)
Clan
:
FKBP
(43)
Family
:
Rotamase
(35)
Escherichia coli (strain K12)
(6)
1a
Rotamase-1m5yD01
D:289-382
1b
Rotamase-1m5yD02
D:289-382
1c
Rotamase-1m5yD03
D:289-382
1d
Rotamase-1m5yD04
D:289-382
1e
Rotamase-1m5yD05
D:289-382
1f
Rotamase-1m5yD06
D:289-382
1g
Rotamase-1m5yD07
D:289-382
1h
Rotamase-1m5yD08
D:289-382
Clan
:
Trigger_C
(7)
Family
:
SurA_N
(3)
Escherichia coli (strain K12)
(2)
2a
SurA_N-1m5yD09
D:25-142
2b
SurA_N-1m5yD10
D:25-142
2c
SurA_N-1m5yD11
D:25-142
2d
SurA_N-1m5yD12
D:25-142
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