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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF SURA, A MOLECULAR CHAPERONE THAT FACILITATES OUTER MEMBRANE PORIN FOLDING
 
Authors :  E. Bitto, D. B. Mckay
Date :  10 Jul 02  (Deposition) - 08 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Survival Protein A, Periplasmic Molecular Chaperone, Membrane Protein Folding, Gram Negative Bacteria, Crystal Structure, Isomerase, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Bitto, D. B. Mckay
Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Folding Of Outer Membrane Porins
Structure V. 10 1489 2002
PubMed-ID: 12429090  |  Reference-DOI: 10.1016/S0969-2126(02)00877-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SURVIVAL PROTEIN SURA
    Chains: A, B, C, D
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PTYB2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SURA
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: SURVIVAL PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M5Y)

(-) Sites  (0, 0)

(no "Site" information available for 1M5Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M5Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M5Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M5Y)

(-) PROSITE Motifs  (2, 16)

Asymmetric/Biological Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PPIC_PPIASE_2PS50198 PpiC-type peptidyl-prolyl cis-trans isomerase family profile.SURA_ECOLI171-272
 
 
 
282-382
 
 
 		  8A:172-272
B:172-272
C:172-272
D:172-272
A:282-382
B:283-382
C:283-382
D:282-382
2PPIC_PPIASE_1PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature.SURA_ECOLI212-232
 
 
 
321-342
 
 
 		  8A:212-232
B:212-232
C:212-232
D:212-232
A:321-342
B:321-342
C:321-342
D:321-342

(-) Exons   (0, 0)

(no "Exon" information available for 1M5Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
 aligned with SURA_ECOLI | P0ABZ6 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:403
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
           SURA_ECOLI    25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
               SCOP domains d1m5ya1 A:25-164,A:395-427 Porin chaperone SurA, peptide-binding domain                                                                     -------d1m5ya2 A:172-278 Porin chaperone SurA, PPIase domains                                                     d1m5ya3 A:279-386 Porin chaperone SurA, PPIase domains                                                      --------d1m5ya1 A:25-164,A:395-427        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------1m       5yA02 A:163-276,A:396-420  [code=3.10.50.40, no name defined]                                            ---1m5yA03 A:280-386  [code=3.10.50.40, no name defined]                                                              -1m5yA02                  ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.-------..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh.eeeeehhhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee........eeeeeeeeeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhh.eeeeehhhhhhhhhhhhhhh.........ee....eeeeeeeeeeee--------hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_2  PDB: A:172-272 UniProt: 171-272                                                        ---------PPIC_PPIASE_2  PDB: A:282-382 UniProt: 282-382                                                       --------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_1        ----------------------------------------------------------------------------------------PPIC_PPIASE_1         ------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m5y A  25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQV-------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNV--------DRAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384 |       -|      404       414       424   
                                                                                                                                                                     164     172                                                                                                                                                                                                                   386      395                                


Chain B from PDB  Type:PROTEIN  Length:377
 aligned with SURA_ECOLI | P0ABZ6 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:403
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
           SURA_ECOLI    25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
               SCOP domains d1m5yb1 B:25-163,B:396-427 Porin chaperone SurA, peptide-binding domain                                                                    --------d1m5yb2 B:172-274 Porin chaperone SurA, PPIase domains                                                 --------d1m5yb3 B:283-385 Porin chaperone SurA, PPIase domains                                                 ----------d1m5yb1 B:25-163,B:396-427       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------1        m5yB02 B:163-274,B:396-420  [code=3.10.50.40, no name defined]                                                 1m5yB03 B:283-385  [code=3.10.50.40, no name defined]                                                            1m5yB02                  ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh--------..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh.eeeeehhhhhhhhhhh.........eeeeeee..eeeeeeeeee.--------..eeeeeeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhh..........eeeeehhhhhhhhhhhhhhhh........eee..eeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_2  PDB: B:172-272 UniProt: 171-272                                                        ---------PPIC_PPIASE_2  PDB: B:283-382 UniProt: 282-382                                                       --------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_1        ----------------------------------------------------------------------------------------PPIC_PPIASE_1         ------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m5y B  25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQ--------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR--------TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN----------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
                                    34        44        54        64        74        84        94       104       114       124       134       144       154        |-       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384|        - |     404       414       424   
                                                                                                                                                                    163      172                                                                                                   274      283                                                                                                   385        396                               


Chain C from PDB  Type:PROTEIN  Length:376
 aligned with SURA_ECOLI | P0ABZ6 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:403
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
           SURA_ECOLI    25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
               SCOP domains d1m5yc1 C:25-163,C:396-427 Porin chaperone SurA, peptide-binding domain                                                                    --------d1m5yc2 C:172-273 Porin chaperone SurA, PPIase domains                                                ---------d1m5yc3 C:283-385 Porin chaperone SurA, PPIase domains                                                 ----------d1m5yc1 C:25-163,C:396-427       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------1        m5yC02 C:163-273,C:396-420  [code=3.10.50.40, no name defined]                                                 1m5yC03 C:283-385  [code=3.10.50.40, no name defined]                                                            1m5yC02                  ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh--------..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhh.eeeeehhhhhhhhhhh.........eeeeee...eeeeeeeee.---------..eeeeeeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhh..........eeeeehhhhhhhhhhhhhhh.........ee....eeeeeeee...----------hhhhhhhhhhhhhhhhhhhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_2  PDB: C:172-272 UniProt: 171-272                                                        ---------PPIC_PPIASE_2  PDB: C:283-382 UniProt: 282-382                                                       --------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_1        ----------------------------------------------------------------------------------------PPIC_PPIASE_1         ------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m5y C  25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQ--------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDL---------TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN----------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS 427
                                    34        44        54        64        74        84        94       104       114       124       134       144       154        |-       174       184       194       204       214       224       234       244       254       264        |-       284       294       304       314       324       334       344       354       364       374       384|        - |     404       414       424   
                                                                                                                                                                    163      172                                                                                                  273       283                                                                                                   385        396                               


Chain D from PDB  Type:PROTEIN  Length:389
 aligned with SURA_ECOLI | P0ABZ6 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:404
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424    
           SURA_ECOLI    25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN 428
               SCOP domains d1m5yd1 D:25-163,D:396-428 Porin chaperone SurA, peptide-binding domain                                                                    --------d1m5yd2 D:172-278 Porin chaperone SurA, PPIase domains                                                     d1m5yd3 D:279-388 Porin chaperone SurA, PPIase domains                                                        -------d1m5yd1 D:25-163,D:396-428        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------1        m5yD02 D:163-276,D:396-420  [code=3.10.50.40, no name defined]                                           ---1m5yD03 D:280-386  [code=3.10.50.40, no name defined]                                                      --       1m5yD02                  -------- CATH domains
           Pfam domains (1) SurA_N-1m5yD09 D:25-142                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD01 D:289-382                                                                    ---------------------------------------------- Pfam domains (1)
           Pfam domains (2) SurA_N-1m5yD10 D:25-142                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD02 D:289-382                                                                    ---------------------------------------------- Pfam domains (2)
           Pfam domains (3) SurA_N-1m5yD11 D:25-142                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD03 D:289-382                                                                    ---------------------------------------------- Pfam domains (3)
           Pfam domains (4) SurA_N-1m5yD12 D:25-142                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD04 D:289-382                                                                    ---------------------------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD05 D:289-382                                                                    ---------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD06 D:289-382                                                                    ---------------------------------------------- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD07 D:289-382                                                                    ---------------------------------------------- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rotamase-1m5yD08 D:289-382                                                                    ---------------------------------------------- Pfam domains (8)
         Sec.struct. author ...eeeee...eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh--------..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh.eeeeehhhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee........eeeeeeeeeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhh.eeeeehhhhhhhhhhhhhhh.........ee....eeeeeeeeeeee..-------hhhhhhhhhhhhhhhhhhhhhhhhhh.eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_2  PDB: D:172-272 UniProt: 171-272                                                        ---------PPIC_PPIASE_2  PDB: D:282-382 UniProt: 282-382                                                       ---------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_1        ----------------------------------------------------------------------------------------PPIC_PPIASE_1         -------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m5y D  25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQ--------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDK-------RAYRMLMNRKFSEEAASWMQEQRASAYVKILSN 428
                                    34        44        54        64        74        84        94       104       114       124       134       144       154        |-       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384   |     - |     404       414       424    
                                                                                                                                                                    163      172                                                                                                                                                                                                                     388     396
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Roll (3276)
(-)
Topology: Chitinase A; domain 3 (225)
(-)
Homologous Superfamily: [code=3.10.50.40, no name defined] (98)
(-)
Escherichia coli. Organism_taxid: 562. (6)
1a1m5yA03A:280-386
1b1m5yB02B:163-274,B:396-420
1c1m5yD02D:163-276,D:396-420
1d1m5yA02A:163-276,A:396-420
1e1m5yD03D:280-386
1f1m5yB03B:283-385
1g1m5yC03C:283-385
1h1m5yC02C:163-273,C:396-420

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: FKBP (43)
(-)
Clan: Trigger_C (7)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (SURA_ECOLI | P0ABZ6)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0043165    Gram-negative-bacterium-type cell outer membrane assembly    The assembly of an outer membrane of the type formed in Gram-negative bacteria. This membrane is enriched in polysaccharide and protein, and the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0051085    chaperone mediated protein folding requiring cofactor    The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release.
    GO:0060274    maintenance of stationary phase    The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction. Stationary phase can be in response to limited nutrients or a build-up of toxic substances in the environment.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
    GO:0050821    protein stabilization    Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
    GO:0044010    single-species biofilm formation    A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  1m5y
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 Related Entries

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        SURA_ECOLI | P0ABZ6: 2pv1 2pv2 2pv3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1M5Y)