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1M5H
Biol. Unit 1
Info
Asym.Unit (403 KB)
Biol.Unit 1 (201 KB)
Biol.Unit 2 (200 KB)
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(1)
Title
:
FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM ARCHAEOGLOBUS FULGIDUS
Authors
:
B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Date
:
09 Jul 02 (Deposition) - 26 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Alpha/Beta Sandwich, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Crystal Structures And Enzymatic Properties Of Three Formyltransferases From Archaea: Environmental Adaptation And Evolutionary Relationship.
Protein Sci. V. 11 2168 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
1p: POTASSIUM ION (Kp)
1q: POTASSIUM ION (Kq)
1r: POTASSIUM ION (Kr)
1s: POTASSIUM ION (Ks)
1t: POTASSIUM ION (Kt)
1u: POTASSIUM ION (Ku)
1v: POTASSIUM ION (Kv)
1w: POTASSIUM ION (Kw)
1x: POTASSIUM ION (Kx)
View:
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC8 (SOFTWARE)
12: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU C:2057 , ILE C:2187 , SER C:2188 , VAL C:2190 , VAL C:2193
BINDING SITE FOR RESIDUE K C 8001
02
AC2
SOFTWARE
GLU A:57 , ILE A:187 , SER A:188 , VAL A:190 , VAL A:193
BINDING SITE FOR RESIDUE K A 8002
03
AC3
SOFTWARE
GLU C:2039 , THR D:3041 , GLY D:3044 , ALA D:3054 , PRO D:3196
BINDING SITE FOR RESIDUE K D 8003
04
AC5
SOFTWARE
GLU A:39 , THR B:1041 , GLY B:1044 , ALA B:1054 , PRO B:1196
BINDING SITE FOR RESIDUE K B 8005
05
AC6
SOFTWARE
GLU D:3057 , ILE D:3187 , SER D:3188 , VAL D:3190 , VAL D:3193
BINDING SITE FOR RESIDUE K D 8006
06
AC7
SOFTWARE
THR C:2041 , GLY C:2044 , ALA C:2054 , PRO C:2196 , GLU D:3039
BINDING SITE FOR RESIDUE K C 8007
07
BC2
SOFTWARE
VAL A:96 , LEU A:97 , ALA A:99 , THR A:102 , MET A:144 , GLU A:146 , PHE A:149
BINDING SITE FOR RESIDUE K A 8011
08
BC3
SOFTWARE
VAL D:3096 , LEU D:3097 , ALA D:3099 , THR D:3102 , GLU D:3146 , PHE D:3149
BINDING SITE FOR RESIDUE K D 8012
09
BC5
SOFTWARE
VAL C:2096 , LEU C:2097 , ALA C:2099 , THR C:2102 , MET C:2144 , GLU C:2146 , PHE C:2149
BINDING SITE FOR RESIDUE K C 8014
10
BC6
SOFTWARE
VAL B:1096 , LEU B:1097 , ALA B:1099 , THR B:1102 , MET B:1144 , GLU B:1146 , PHE B:1149
BINDING SITE FOR RESIDUE K B 8015
11
BC8
SOFTWARE
GLU B:1057 , ILE B:1187 , SER B:1188 , VAL B:1190 , VAL B:1193
BINDING SITE FOR RESIDUE K B 8017
12
CC1
SOFTWARE
THR A:41 , GLY A:44 , ALA A:54 , PRO A:196 , GLU B:1039
BINDING SITE FOR RESIDUE K A 8019
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1m5ha1 (A:1-145)
1b: SCOP_d1m5ha2 (A:146-297)
1c: SCOP_d1m5hf1 (F:5001-5145)
1d: SCOP_d1m5hf2 (F:5146-5297)
1e: SCOP_d1m5hg1 (G:6001-6145)
1f: SCOP_d1m5hg2 (G:6146-6297)
1g: SCOP_d1m5hh1 (H:7001-7145)
1h: SCOP_d1m5hh2 (H:7146-7297)
1i: SCOP_d1m5hb1 (B:1001-1145)
1j: SCOP_d1m5hb2 (B:1146-1297)
1k: SCOP_d1m5hc1 (C:2001-2145)
1l: SCOP_d1m5hc2 (C:2146-2297)
1m: SCOP_d1m5hd1 (D:3001-3145)
1n: SCOP_d1m5hd2 (D:3146-3297)
1o: SCOP_d1m5he1 (E:4001-4145)
1p: SCOP_d1m5he2 (E:4146-4297)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Formylmethanofuran:tetrahydromethanopterin formyltransferase
(5)
Family
:
Formylmethanofuran:tetrahydromethanopterin formyltransferase
(5)
Protein domain
:
Formylmethanofuran:tetrahydromethanopterin formyltransferase
(5)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
1a
d1m5ha1
A:1-145
1b
d1m5ha2
A:146-297
1c
d1m5hf1
F:5001-5145
1d
d1m5hf2
F:5146-5297
1e
d1m5hg1
G:6001-6145
1f
d1m5hg2
G:6146-6297
1g
d1m5hh1
H:7001-7145
1h
d1m5hh2
H:7146-7297
1i
d1m5hb1
B:1001-1145
1j
d1m5hb2
B:1146-1297
1k
d1m5hc1
C:2001-2145
1l
d1m5hc2
C:2146-2297
1m
d1m5hd1
D:3001-3145
1n
d1m5hd2
D:3146-3297
1o
d1m5he1
E:4001-4145
1p
d1m5he2
E:4146-4297
[
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]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1m5hA02 (A:17-162)
1b: CATH_1m5hB02 (B:1017-1162)
1c: CATH_1m5hC01 (C:2001-2016,C:2163-2297)
1d: CATH_1m5hD01 (D:3001-3016,D:3163-3297)
1e: CATH_1m5hE01 (E:4001-4016,E:4163-4297)
1f: CATH_1m5hF01 (F:5001-5016,F:5163-5297)
1g: CATH_1m5hG01 (G:6001-6016,G:6163-6297)
1h: CATH_1m5hH01 (H:7001-7016,H:7163-7297)
1i: CATH_1m5hC02 (C:2017-2162)
1j: CATH_1m5hD02 (D:3017-3162)
1k: CATH_1m5hE02 (E:4017-4162)
1l: CATH_1m5hF02 (F:5017-5162)
1m: CATH_1m5hG02 (G:6017-6162)
1n: CATH_1m5hH02 (H:7017-7162)
1o: CATH_1m5hA01 (A:1-16,A:163-297)
1p: CATH_1m5hB01 (B:1001-1016,B:1163-1297)
View:
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Classes
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)
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Architectures
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.520, no name defined]
(5)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(1)
1a
1m5hA02
A:17-162
1b
1m5hB02
B:1017-1162
1c
1m5hC01
C:2001-2016,C:2163-2297
1d
1m5hD01
D:3001-3016,D:3163-3297
1e
1m5hE01
E:4001-4016,E:4163-4297
1f
1m5hF01
F:5001-5016,F:5163-5297
1g
1m5hG01
G:6001-6016,G:6163-6297
1h
1m5hH01
H:7001-7016,H:7163-7297
1i
1m5hC02
C:2017-2162
1j
1m5hD02
D:3017-3162
1k
1m5hE02
E:4017-4162
1l
1m5hF02
F:5017-5162
1m
1m5hG02
G:6017-6162
1n
1m5hH02
H:7017-7162
1o
1m5hA01
A:1-16,A:163-297
1p
1m5hB01
B:1001-1016,B:1163-1297
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_FTR_1m5hH01 (H:7001-7144)
1b: PFAM_FTR_1m5hH02 (H:7001-7144)
1c: PFAM_FTR_1m5hH03 (H:7001-7144)
1d: PFAM_FTR_1m5hH04 (H:7001-7144)
1e: PFAM_FTR_1m5hH05 (H:7001-7144)
1f: PFAM_FTR_1m5hH06 (H:7001-7144)
1g: PFAM_FTR_1m5hH07 (H:7001-7144)
1h: PFAM_FTR_1m5hH08 (H:7001-7144)
2a: PFAM_FTR_C_1m5hH09 (H:7146-7296)
2b: PFAM_FTR_C_1m5hH10 (H:7146-7296)
2c: PFAM_FTR_C_1m5hH11 (H:7146-7296)
2d: PFAM_FTR_C_1m5hH12 (H:7146-7296)
2e: PFAM_FTR_C_1m5hH13 (H:7146-7296)
2f: PFAM_FTR_C_1m5hH14 (H:7146-7296)
2g: PFAM_FTR_C_1m5hH15 (H:7146-7296)
2h: PFAM_FTR_C_1m5hH16 (H:7146-7296)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: FTR]
(2)
Family
:
FTR
(2)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
1a
FTR-1m5hH01
H:7001-7144
1b
FTR-1m5hH02
H:7001-7144
1c
FTR-1m5hH03
H:7001-7144
1d
FTR-1m5hH04
H:7001-7144
1e
FTR-1m5hH05
H:7001-7144
1f
FTR-1m5hH06
H:7001-7144
1g
FTR-1m5hH07
H:7001-7144
1h
FTR-1m5hH08
H:7001-7144
Clan
:
no clan defined [family: FTR_C]
(2)
Family
:
FTR_C
(2)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
2a
FTR_C-1m5hH09
H:7146-7296
2b
FTR_C-1m5hH10
H:7146-7296
2c
FTR_C-1m5hH11
H:7146-7296
2d
FTR_C-1m5hH12
H:7146-7296
2e
FTR_C-1m5hH13
H:7146-7296
2f
FTR_C-1m5hH14
H:7146-7296
2g
FTR_C-1m5hH15
H:7146-7296
2h
FTR_C-1m5hH16
H:7146-7296
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Asym.Unit (403 KB)
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Header - Biol.Unit 1
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