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(-) Description

Title :  FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Date :  09 Jul 02  (Deposition) - 26 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Alpha/Beta Sandwich, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Crystal Structures And Enzymatic Properties Of Three Formyltransferases From Archaea: Environmental Adaptation And Evolutionary Relationship.
Protein Sci. V. 11 2168 2002
PubMed-ID: 12192072  |  Reference-DOI: 10.1110/PS.0211002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.3.1.101
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Synonym: FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1K24Ligand/IonPOTASSIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU C:2057 , ILE C:2187 , SER C:2188 , VAL C:2190 , VAL C:2193BINDING SITE FOR RESIDUE K C 8001
02AC2SOFTWAREGLU A:57 , ILE A:187 , SER A:188 , VAL A:190 , VAL A:193BINDING SITE FOR RESIDUE K A 8002
03AC3SOFTWAREGLU C:2039 , THR D:3041 , GLY D:3044 , ALA D:3054 , PRO D:3196BINDING SITE FOR RESIDUE K D 8003
04AC4SOFTWAREGLU H:7057 , ILE H:7187 , SER H:7188 , VAL H:7190 , VAL H:7193BINDING SITE FOR RESIDUE K H 8004
05AC5SOFTWAREGLU A:39 , THR B:1041 , GLY B:1044 , ALA B:1054 , PRO B:1196BINDING SITE FOR RESIDUE K B 8005
06AC6SOFTWAREGLU D:3057 , ILE D:3187 , SER D:3188 , VAL D:3190 , VAL D:3193BINDING SITE FOR RESIDUE K D 8006
07AC7SOFTWARETHR C:2041 , GLY C:2044 , ALA C:2054 , PRO C:2196 , GLU D:3039BINDING SITE FOR RESIDUE K C 8007
08AC8SOFTWAREGLU G:6057 , ILE G:6187 , SER G:6188 , VAL G:6190 , VAL G:6193BINDING SITE FOR RESIDUE K G 8008
09AC9SOFTWAREGLU F:5057 , ILE F:5187 , SER F:5188 , VAL F:5190 , VAL F:5193BINDING SITE FOR RESIDUE K F 8009
10BC1SOFTWAREVAL F:5096 , LEU F:5097 , ALA F:5099 , THR F:5102 , GLU F:5146 , PHE F:5149BINDING SITE FOR RESIDUE K F 8010
11BC2SOFTWAREVAL A:96 , LEU A:97 , ALA A:99 , THR A:102 , MET A:144 , GLU A:146 , PHE A:149BINDING SITE FOR RESIDUE K A 8011
12BC3SOFTWAREVAL D:3096 , LEU D:3097 , ALA D:3099 , THR D:3102 , GLU D:3146 , PHE D:3149BINDING SITE FOR RESIDUE K D 8012
13BC4SOFTWARETHR G:6041 , GLY G:6044 , ALA G:6054 , PRO G:6196 , GLU H:7039BINDING SITE FOR RESIDUE K G 8013
14BC5SOFTWAREVAL C:2096 , LEU C:2097 , ALA C:2099 , THR C:2102 , MET C:2144 , GLU C:2146 , PHE C:2149BINDING SITE FOR RESIDUE K C 8014
15BC6SOFTWAREVAL B:1096 , LEU B:1097 , ALA B:1099 , THR B:1102 , MET B:1144 , GLU B:1146 , PHE B:1149BINDING SITE FOR RESIDUE K B 8015
16BC7SOFTWARETHR E:4041 , GLY E:4044 , ALA E:4054 , PRO E:4196 , GLU F:5039BINDING SITE FOR RESIDUE K E 8016
17BC8SOFTWAREGLU B:1057 , ILE B:1187 , SER B:1188 , VAL B:1190 , VAL B:1193BINDING SITE FOR RESIDUE K B 8017
18BC9SOFTWAREGLU E:4057 , ILE E:4187 , SER E:4188 , VAL E:4190 , VAL E:4193BINDING SITE FOR RESIDUE K E 8018
19CC1SOFTWARETHR A:41 , GLY A:44 , ALA A:54 , PRO A:196 , GLU B:1039BINDING SITE FOR RESIDUE K A 8019
20CC2SOFTWAREGLU G:6039 , THR H:7041 , GLY H:7044 , ALA H:7054 , PRO H:7196BINDING SITE FOR RESIDUE K H 8020
21CC3SOFTWAREVAL G:6096 , LEU G:6097 , ALA G:6099 , THR G:6102 , MET G:6144 , GLU G:6146 , PHE G:6149BINDING SITE FOR RESIDUE K G 8021
22CC4SOFTWAREGLU E:4039 , THR F:5041 , GLY F:5044 , ALA F:5054 , PRO F:5196BINDING SITE FOR RESIDUE K F 8022
23CC5SOFTWAREVAL H:7096 , LEU H:7097 , ALA H:7099 , THR H:7102 , GLU H:7146 , PHE H:7149BINDING SITE FOR RESIDUE K H 8023
24CC6SOFTWAREVAL E:4096 , LEU E:4097 , ALA E:4099 , THR E:4102 , GLU E:4146 , PHE E:4149BINDING SITE FOR RESIDUE K E 8024

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M5H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M5H)

(-) Exons   (0, 0)

(no "Exon" information available for 1M5H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5ha1 A:1-145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                     d1m5ha2 A:146-297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                           SCOP domains
               CATH domains 1m5hA01         1m5hA02 A:17-162  [code=3.30.70.520, no name defined]                                                                                             1m5hA01 A:1-16,A:163-297  [code=3.30.70.520, no name defined]                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h A    1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       


Chain B from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hb1 B:1001-1145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hb2 B:1146-1297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hB01         1m5hB02 B:1017-1162  [code=3.30.70.520, no name defined]                                                                                          1m5hB01 B:1001-1016,B:1163-1297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhh...................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhh........hhhhh....................hhhhhhhhhhh....................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h B 1001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 1297
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290       


Chain C from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hc1 C:2001-2145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hc2 C:2146-2297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hC01         1m5hC02 C:2017-2162  [code=3.30.70.520, no name defined]                                                                                          1m5hC01 C:2001-2016,C:2163-2297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhh........hhhhh...................hhhhhhhhh.......................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h C 2001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 2297
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250      2260      2270      2280      2290       


Chain D from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hd1 D:3001-3145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hd2 D:3146-3297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hD01         1m5hD02 D:3017-3162  [code=3.30.70.520, no name defined]                                                                                          1m5hD01 D:3001-3016,D:3163-3297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhh.......................hhhhhhhhhhhhhhhhh.............hhhhh......hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h D 3001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 3297
                                  3010      3020      3030      3040      3050      3060      3070      3080      3090      3100      3110      3120      3130      3140      3150      3160      3170      3180      3190      3200      3210      3220      3230      3240      3250      3260      3270      3280      3290       


Chain E from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5he1 E:4001-4145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5he2 E:4146-4297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hE01         1m5hE02 E:4017-4162  [code=3.30.70.520, no name defined]                                                                                          1m5hE01 E:4001-4016,E:4163-4297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh....................hhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h E 4001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 4297
                                  4010      4020      4030      4040      4050      4060      4070      4080      4090      4100      4110      4120      4130      4140      4150      4160      4170      4180      4190      4200      4210      4220      4230      4240      4250      4260      4270      4280      4290       


Chain F from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hf1 F:5001-5145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hf2 F:5146-5297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hF01         1m5hF02 F:5017-5162  [code=3.30.70.520, no name defined]                                                                                          1m5hF01 F:5001-5016,F:5163-5297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h F 5001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 5297
                                  5010      5020      5030      5040      5050      5060      5070      5080      5090      5100      5110      5120      5130      5140      5150      5160      5170      5180      5190      5200      5210      5220      5230      5240      5250      5260      5270      5280      5290       


Chain G from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hg1 G:6001-6145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hg2 G:6146-6297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hG01         1m5hG02 G:6017-6162  [code=3.30.70.520, no name defined]                                                                                          1m5hG01 G:6001-6016,G:6163-6297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhh......................................hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh........................hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h G 6001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 6297
                                  6010      6020      6030      6040      6050      6060      6070      6080      6090      6100      6110      6120      6130      6140      6150      6160      6170      6180      6190      6200      6210      6220      6230      6240      6250      6260      6270      6280      6290       


Chain H from PDB  Type:PROTEIN  Length:297
 aligned with FTR_ARCFU | O28076 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_ARCFU      1 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKFDTGFKLKFFADGYEKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPEGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF  297
               SCOP domains d1m5hh1 H:7001-7145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5hh2 H:7146-7297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5hH01         1m5hH02 H:7017-7162  [code=3.30.70.520, no name defined]                                                                                          1m5hH01 H:7001-7016,H:7163-7297  [code=3.30.70.520, no name defined]                                                                    CATH domains
           Pfam domains (1) FTR-1m5hH01 H:7001-7144                                                                                                                         -FTR_C-1m5hH09 H:7146-7296                                                                                                                              - Pfam domains (1)
           Pfam domains (2) FTR-1m5hH02 H:7001-7144                                                                                                                         -FTR_C-1m5hH10 H:7146-7296                                                                                                                              - Pfam domains (2)
           Pfam domains (3) FTR-1m5hH03 H:7001-7144                                                                                                                         -FTR_C-1m5hH11 H:7146-7296                                                                                                                              - Pfam domains (3)
           Pfam domains (4) FTR-1m5hH04 H:7001-7144                                                                                                                         -FTR_C-1m5hH12 H:7146-7296                                                                                                                              - Pfam domains (4)
           Pfam domains (5) FTR-1m5hH05 H:7001-7144                                                                                                                         -FTR_C-1m5hH13 H:7146-7296                                                                                                                              - Pfam domains (5)
           Pfam domains (6) FTR-1m5hH06 H:7001-7144                                                                                                                         -FTR_C-1m5hH14 H:7146-7296                                                                                                                              - Pfam domains (6)
           Pfam domains (7) FTR-1m5hH07 H:7001-7144                                                                                                                         -FTR_C-1m5hH15 H:7146-7296                                                                                                                              - Pfam domains (7)
           Pfam domains (8) FTR-1m5hH08 H:7001-7144                                                                                                                         -FTR_C-1m5hH16 H:7146-7296                                                                                                                              - Pfam domains (8)
         Sec.struct. author ............................hhhhhhhhhhhhhh..................hhhhh..............hhhhhhhhhhhhhhhhh...................hhhhhhhhhhh.............................................hhhhhhhhhhhhhhhhhh.......hhhhh...................hhhhhhhhh.......................hhhhhhhhhhhhhhhhh........................hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5h H 7001 MKVNGVEVEETFAEAFDIKIARVLITGYDYYWAWVAANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQCVLTAPTTAVFNGLPDAEEKDDTGFKLKFFADGYQKEVEVGGRKCWAVPMMEGDFIIENDIGYTNGIAGGNFFIMAETQPSALAAAKAAVDAISDVEGVITPFPGGIVASGSKVGANKYKFLKASTNEKFAPSIRDQVEGTQIPAGVKAVYEIVINGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKLGKHIINLNELF 7297
                                  7010      7020      7030      7040      7050      7060      7070      7080      7090      7100      7110      7120      7130      7140      7150      7160      7170      7180      7190      7200      7210      7220      7230      7240      7250      7260      7270      7280      7290
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: Ferredoxin-like (1795)
(-)
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase (5)
(-)
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase (5)
(-)
Protein domain: Formylmethanofuran:tetrahydromethanopterin formyltransferase (5)
(-)
Archaeoglobus fulgidus [TaxId: 2234] (1)
1ad1m5ha1A:1-145
1bd1m5ha2A:146-297
1cd1m5hf1F:5001-5145
1dd1m5hf2F:5146-5297
1ed1m5hg1G:6001-6145
1fd1m5hg2G:6146-6297
1gd1m5hh1H:7001-7145
1hd1m5hh2H:7146-7297
1id1m5hb1B:1001-1145
1jd1m5hb2B:1146-1297
1kd1m5hc1C:2001-2145
1ld1m5hc2C:2146-2297
1md1m5hd1D:3001-3145
1nd1m5hd2D:3146-3297
1od1m5he1E:4001-4145
1pd1m5he2E:4146-4297

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Alpha-Beta Plaits (1688)
(-)
Homologous Superfamily: [code=3.30.70.520, no name defined] (5)
(-)
Archaeoglobus fulgidus. Organism_taxid: 2234. (1)
1a1m5hA02A:17-162
1b1m5hB02B:1017-1162
1c1m5hC01C:2001-2016,C:2163-2297
1d1m5hD01D:3001-3016,D:3163-3297
1e1m5hE01E:4001-4016,E:4163-4297
1f1m5hF01F:5001-5016,F:5163-5297
1g1m5hG01G:6001-6016,G:6163-6297
1h1m5hH01H:7001-7016,H:7163-7297
1i1m5hC02C:2017-2162
1j1m5hD02D:3017-3162
1k1m5hE02E:4017-4162
1l1m5hF02F:5017-5162
1m1m5hG02G:6017-6162
1n1m5hH02H:7017-7162
1o1m5hA01A:1-16,A:163-297
1p1m5hB01B:1001-1016,B:1163-1297

(-) Pfam Domains  (2, 16)

Asymmetric Unit
(-)
Clan: no clan defined [family: FTR] (2)
(-)
Family: FTR (2)
(-)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (1)
1aFTR-1m5hH01H:7001-7144
1bFTR-1m5hH02H:7001-7144
1cFTR-1m5hH03H:7001-7144
1dFTR-1m5hH04H:7001-7144
1eFTR-1m5hH05H:7001-7144
1fFTR-1m5hH06H:7001-7144
1gFTR-1m5hH07H:7001-7144
1hFTR-1m5hH08H:7001-7144
(-)
Clan: no clan defined [family: FTR_C] (2)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (FTR_ARCFU | O28076)
molecular function
    GO:0030270    formylmethanofuran-tetrahydromethanopterin N-formyltransferase activity    Catalysis of the reaction: 5,6,7,8-tetrahydromethanopterin + N-formylmethanofuran + H(+) = N(5)-formyl-5,6,7,8-tetrahydromethanopterin + methanofuran.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0019516    lactate oxidation    The chemical reactions and pathways resulting in the conversion of lactate to other compounds, such as pyruvate, with concomitant loss of electrons.
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1ftr FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM METHANOPYRUS KANDLERI
1m5s FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM METHANOSARCINA BARKERI