PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1M39
Asym. Unit
Info
Asym.Unit (537 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(25 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL FRAGMENT (F86-I165) OF THE HUMAN CENTRIN 2 IN CALCIUM SATURATED FORM
Authors
:
E. Matei, S. Miron, Y. Blouquit, P. Duchambon, P. Durussel, J. A. Cox, C. T. Craescu
Date
:
27 Jun 02 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (25 x)
Keywords
:
Ef-Hand, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Matei, S. Miron, Y. Blouquit, P. Duchambon, P. Durussel, J. A. Cox, C. T. Craescu
C-Terminal Half Of Human Centrin 2 Behaves Like A Regulatory Ef-Hand Domain
Biochemistry V. 42 1439 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (-|-|A:101-136|A:137-165)
2: EF_HAND_1 (-|A:150-162)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CETN2_HUMAN
28-63
64-99
101-136
137-172
2
-
-
A:101-136
A:137-165
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CETN2_HUMAN
41-53
150-162
1
-
A:150-162
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:86-97)
Exon 1.3c (A:98-143)
Exon 1.4b (A:144-165)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.3a
2: Boundary 1.3a/1.3c
3: Boundary 1.3c/1.4b
4: Boundary 1.4b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000370277
1
ENSE00001452251
X:151999321-151999252
70
CETN2_HUMAN
1-1
1
0
-
-
1.2a
ENST00000370277
2a
ENSE00001302515
X:151998304-151998146
159
CETN2_HUMAN
2-54
53
0
-
-
1.3a
ENST00000370277
3a
ENSE00000979874
X:151997821-151997693
129
CETN2_HUMAN
55-97
43
1
A:86-97
12
1.3c
ENST00000370277
3c
ENSE00000979875
X:151997218-151997081
138
CETN2_HUMAN
98-143
46
1
A:98-143
46
1.4b
ENST00000370277
4b
ENSE00001452248
X:151996474-151995517
958
CETN2_HUMAN
144-172
29
1
A:144-165
22
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1m39a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Caltractin (centrin 2)
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1m39a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1m39A01 (A:99-165)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1m39A01
A:99-165
[
close CATH info
]
Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1m39A01 (A:86-93)
2a: PFAM_EF_hand_6_1m39A02 (A:117-165)
3a: PFAM_efhand_1m39A03 (A:141-165)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-1m39A01
A:86-93
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-1m39A02
A:117-165
Family
:
efhand
(70)
Homo sapiens (Human)
(8)
3a
efhand-1m39A03
A:141-165
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (537 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1M39
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help