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1LRU
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI PEPTIDE DEFORMYLASE COMPLEXED WITH ANTIBIOTIC ACTINONIN
Authors
:
J. -P. Guilloteau, M. Mathieu, C. Giglione, V. Blanc, A. Dupuy, M. Chevrier, P. Gil, A. Famechon, T. Meinnel, V. Mikol
Date
:
16 May 02 (Deposition) - 24 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: B,C (1x)
Keywords
:
Actinonin, Inhibition, Polypeptide Deformylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Guilloteau, M. Mathieu, C. Giglione, V. Blanc, A. Dupuy, M. Chevrier, P. Gil, A. Famechon, T. Meinnel, V. Mikol
The Crystal Structures Of Four Peptide Deformylases Bound To The Antibiotic Actinonin Reveal Two Distinct Types: A Platform For The Structure-Based Design Of Antibacterial Agents.
J. Mol. Biol. V. 320 951 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ACTINONIN (BB2a)
1b: ACTINONIN (BB2b)
1c: ACTINONIN (BB2c)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BB2
3
Ligand/Ion
ACTINONIN
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
3
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:90 , HIS A:132 , HIS A:136 , BB2 A:501
BINDING SITE FOR RESIDUE ZN A 601
2
AC2
SOFTWARE
GLN B:50 , CYS B:90 , HIS B:132 , HIS B:136 , BB2 B:502
BINDING SITE FOR RESIDUE ZN B 602
3
AC3
SOFTWARE
GLN C:50 , CYS C:90 , HIS C:132 , HIS C:136 , BB2 C:503
BINDING SITE FOR RESIDUE ZN C 603
4
AC4
SOFTWARE
HIS B:54 , GLN B:55 , ARG C:29
BINDING SITE FOR RESIDUE SO4 B 701
5
AC5
SOFTWARE
ARG B:29 , HIS C:54 , GLN C:55 , HOH C:746
BINDING SITE FOR RESIDUE SO4 B 702
6
AC6
SOFTWARE
GLY A:43 , ILE A:44 , GLY A:45 , GLN A:50 , GLU A:87 , GLY A:89 , CYS A:90 , LEU A:91 , ARG A:97 , LEU A:125 , HIS A:132 , GLU A:133 , HIS A:136 , ZN A:601 , HOH A:684
BINDING SITE FOR RESIDUE BB2 A 501
7
AC7
SOFTWARE
GLY B:43 , ILE B:44 , GLY B:45 , GLN B:50 , GLU B:87 , GLU B:88 , GLY B:89 , CYS B:90 , LEU B:91 , ARG B:97 , CYS B:129 , HIS B:132 , GLU B:133 , HIS B:136 , ZN B:602
BINDING SITE FOR RESIDUE BB2 B 502
8
AC8
SOFTWARE
GLY C:43 , ILE C:44 , GLY C:45 , GLN C:50 , GLU C:87 , GLU C:88 , GLY C:89 , CYS C:90 , LEU C:91 , ARG C:97 , HIS C:132 , GLU C:133 , HIS C:136 , ZN C:603
BINDING SITE FOR RESIDUE BB2 C 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1lrua_ (A:)
1b: SCOP_d1lrub_ (B:)
1c: SCOP_d1lruc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Peptide deformylase
(87)
Superfamily
:
Peptide deformylase
(87)
Family
:
Peptide deformylase
(62)
Protein domain
:
Peptide deformylase
(50)
Escherichia coli [TaxId: 562]
(21)
1a
d1lrua_
A:
1b
d1lrub_
B:
1c
d1lruc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1lruA00 (A:1-164)
1b: CATH_1lruB00 (B:1-164)
1c: CATH_1lruC00 (C:1-161)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Peptide Deformylase
(68)
Homologous Superfamily
:
Peptide Deformylase
(68)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1lruA00
A:1-164
1b
1lruB00
B:1-164
1c
1lruC00
C:1-161
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Pep_deformylase_1lruC01 (C:2-152)
1b: PFAM_Pep_deformylase_1lruC02 (C:2-152)
1c: PFAM_Pep_deformylase_1lruC03 (C:2-152)
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Clan
:
no clan defined [family: Pep_deformylase]
(48)
Family
:
Pep_deformylase
(48)
Escherichia coli (strain K12)
(8)
1a
Pep_deformylase-1lruC01
C:2-152
1b
Pep_deformylase-1lruC02
C:2-152
1c
Pep_deformylase-1lruC03
C:2-152
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Asymmetric Unit 1
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Asym.Unit (97 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
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Biol.Unit 4 (63 KB)
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