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1LQT
Biol. Unit 2
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Asym.Unit (581 KB)
Biol.Unit 1 (293 KB)
Biol.Unit 2 (284 KB)
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(1)
Title
:
A COVALENT MODIFICATION OF NADP+ REVEALED BY THE ATOMIC RESOLUTION STRUCTURE OF FPRA, A MYCOBACTERIUM TUBERCULOSIS OXIDOREDUCTASE
Authors
:
R. T. Bossi, A. Aliverti, D. Raimondi, F. Fischer, G. Zanetti, D. Ferrar N. Tahallah, C. S. Maier, A. J. R. Heck, M. Rizzi, A. Mattevi, Tb Struct Genomics Consortium (Tbsgc)
Date
:
13 May 02 (Deposition) - 31 Jul 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nadp+ Derivative, Tuberculosis, Oxidoreductase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Bossi, A. Aliverti, D. Raimondi, F. Fischer, G. Zanetti, D. Ferrari, N. Tahallah, C. S. Maier, A. J. R. Heck, M. Rizzi, A. Mattevi
A Covalent Modification Of Nadp+ Revealed By The Atomic Resolution Structure Of Fpra, A Mycobacterium Tuberculosis Oxidoreductase.
Biochemistry V. 41 8807 2002
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: 4-OXO-NICOTINAMIDE-ADENINE DINUCLE... (ODPa)
3b: 4-OXO-NICOTINAMIDE-ADENINE DINUCLE... (ODPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
ODP
1
Ligand/Ion
4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDE PHOSPHATE
[
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Sites
(9, 9)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC5 (SOFTWARE)
9: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ALA B:148 , GLN B:192 , HOH B:4269
BINDING SITE FOR RESIDUE ACT B 1867
2
AC3
SOFTWARE
ARG A:452 , HOH A:3223 , HOH A:3309 , HOH A:3320 , HOH A:3373 , HIS B:422 , GLY B:454 , HOH B:3674 , HOH B:3985 , HOH B:4097
BINDING SITE FOR RESIDUE ACT B 1868
3
AC7
SOFTWARE
ASN A:292 , ALA A:304 , HOH A:2531 , HOH A:2562 , GLU B:391
BINDING SITE FOR RESIDUE ACT A 1872
4
AC8
SOFTWARE
ARG B:2 , ASP B:31 , ASP B:33 , HOH B:3658 , HOH B:4281
BINDING SITE FOR RESIDUE ACT B 1873
5
AC9
SOFTWARE
ALA B:71 , PHE B:78 , SER B:420 , HOH B:3536 , HOH B:3849
BINDING SITE FOR RESIDUE ACT B 1874
6
BC1
SOFTWARE
ARG B:110 , MET B:111 , LEU B:112 , ASN B:113 , VAL B:322 , ODP B:3458 , HOH B:3971 , HOH B:3976
BINDING SITE FOR RESIDUE ACT B 1875
7
BC2
SOFTWARE
ODP B:3458 , HOH B:3470 , HOH B:3759 , HOH B:4079
BINDING SITE FOR RESIDUE ACT B 1876
8
BC5
SOFTWARE
VAL B:9 , GLY B:10 , GLY B:12 , PRO B:13 , SER B:14 , GLU B:40 , MET B:41 , GLY B:47 , LEU B:48 , GLY B:52 , VAL B:53 , VAL B:82 , VAL B:84 , ALA B:103 , VAL B:104 , GLY B:105 , VAL B:158 , ASP B:161 , TYR B:324 , GLY B:358 , TRP B:359 , GLY B:366 , VAL B:367 , ILE B:368 , ASN B:371 , ODP B:3458 , HOH B:3461 , HOH B:3464 , HOH B:3466 , HOH B:3468 , HOH B:3479 , HOH B:3483 , HOH B:3525 , HOH B:3559 , HOH B:3586 , HOH B:3636 , HOH B:3845 , HOH B:4227
BINDING SITE FOR RESIDUE FAD B 3457
9
BC6
SOFTWARE
HIS B:57 , ARG B:110 , ILE B:153 , ASN B:155 , GLY B:156 , ASN B:157 , VAL B:158 , ASP B:161 , ARG B:199 , ARG B:200 , ALA B:206 , GLU B:211 , SER B:321 , VAL B:322 , PRO B:364 , GLY B:366 , VAL B:367 , ACT B:1875 , ACT B:1876 , FAD B:3457 , HOH B:3463 , HOH B:3468 , HOH B:3470 , HOH B:3474 , HOH B:3488 , HOH B:3491 , HOH B:3501 , HOH B:3513 , HOH B:3527 , HOH B:3542 , HOH B:3546 , HOH B:3554 , HOH B:3574 , HOH B:3586 , HOH B:3620 , HOH B:3767 , HOH B:3839 , HOH B:3852 , HOH B:3872 , HOH B:3964
BINDING SITE FOR RESIDUE ODP B 3458
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1lqta1 (A:109-324)
1b: SCOP_d1lqtb1 (B:109-324)
2a: SCOP_d1lqta2 (A:2-108,A:325-456)
2b: SCOP_d1lqtb2 (B:2-108,B:325-456)
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Classes
(
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
C-terminal domain of adrenodoxin reductase-like
(19)
Protein domain
:
Ferredoxin:NADP reductase FprA
(2)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1lqta1
A:109-324
1b
d1lqtb1
B:109-324
Fold
:
Nucleotide-binding domain
(33)
Superfamily
:
Nucleotide-binding domain
(33)
Family
:
N-terminal domain of adrenodoxin reductase-like
(19)
Protein domain
:
Ferredoxin:NADP reductase FprA
(2)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
2a
d1lqta2
A:2-108,A:325-456
2b
d1lqtb2
B:2-108,B:325-456
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1lqtA01 (A:3-46,A:63-108,A:325-454)
1b: CATH_1lqtB01 (B:3-46,B:63-108,B:325-455)
2a: CATH_1lqtA02 (A:47-62,A:109-324)
2b: CATH_1lqtB02 (B:47-62,B:109-324)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(15)
1a
1lqtA01
A:3-46,A:63-108,A:325-454
1b
1lqtB01
B:3-46,B:63-108,B:325-455
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
2a
1lqtA02
A:47-62,A:109-324
2b
1lqtB02
B:47-62,B:109-324
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Pfam Domains
(0, 0)
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (581 KB)
Header - Asym.Unit
Biol.Unit 1 (293 KB)
Header - Biol.Unit 1
Biol.Unit 2 (284 KB)
Header - Biol.Unit 2
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