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1LPA
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
INTERFACIAL ACTIVATION OF THE LIPASE-PROCOLIPASE COMPLEX BY MIXED MICELLES REVEALED BY X-RAY CRYSTALLOGRAPHY
Authors
:
H. Van Tilbeurgh, M. -P. Egloff, C. Cambillau
Date
:
19 Aug 94 (Deposition) - 01 Nov 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.04
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase(Carboxylic Esterase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Van Tilbeurgh, M. P. Egloff, C. Martinez, N. Rugani, R. Verger, C. Cambillau
Interfacial Activation Of The Lipase-Procolipase Complex By Mixed Micelles Revealed By X-Ray Crystallography.
Nature V. 362 814 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: B-NONYLGLUCOSIDE (BNGa)
2a: CALCIUM ION (CAa)
3a: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BNG
1
Ligand/Ion
B-NONYLGLUCOSIDE
2
CA
1
Ligand/Ion
CALCIUM ION
3
PLC
1
Ligand/Ion
DIUNDECYL PHOSPHATIDYL CHOLINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: CAT (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS B:80 , GLU B:83 , ASN B:84 , ARG B:111 , THR B:112 , GLY B:113 , TRP B:252 , PLC B:452
BINDING SITE FOR RESIDUE BNG B 450
2
AC2
SOFTWARE
GLU B:187 , ARG B:190 , ASP B:192 , ASP B:195
BINDING SITE FOR RESIDUE CA B 451
3
AC3
SOFTWARE
GLY B:76 , PHE B:77 , ILE B:78 , TYR B:114 , SER B:152 , LEU B:153 , ALA B:178 , LEU B:213 , PHE B:215 , TRP B:252 , ARG B:256 , HIS B:263 , BNG B:450
BINDING SITE FOR RESIDUE PLC B 452
4
CAT
UNKNOWN
SER B:152 , ASP B:176 , HIS B:263
NULL
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_078977 (T204M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_078977
T
221
M
LIPP_HUMAN
Disease (PNLIPD)
746000327
B
T
204
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: COLIPASE_2 (A:6-90)
2: COLIPASE_1 (A:55-63)
3: LIPASE_SER (B:146-155)
4: PLAT (B:338-449)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COLIPASE_2
PS51342
Colipase family profile.
COL_PIG
23-107
1
A:6-90
2
COLIPASE_1
PS00121
Colipase signature.
COL_PIG
72-80
1
A:55-63
3
LIPASE_SER
PS00120
Lipases, serine active site.
LIPP_HUMAN
163-172
1
B:146-155
4
PLAT
PS50095
PLAT domain profile.
LIPP_HUMAN
355-465
1
B:338-449
[
close PROSITE info
]
Exons
(11, 11)
Info
All Exons
Exon 1.3 (B:1-50)
Exon 1.4 (B:51-91)
Exon 1.5a (B:92-136)
Exon 1.6 (B:137-174)
Exon 1.7 (B:174-214)
Exon 1.8 (B:214-254)
Exon 1.9 (B:254-293)
Exon 1.10 (B:294-337)
Exon 1.11 (B:337-373)
Exon 1.12 (B:373-429 (gaps))
Exon 1.13 (B:429-449)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5a
04: Boundary 1.5a/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000369221
1
ENSE00001449232
chr10:
118305443-118305470
28
LIPP_HUMAN
-
0
0
-
-
1.2
ENST00000369221
2
ENSE00002173518
chr10:
118305605-118305650
46
LIPP_HUMAN
1-16
16
0
-
-
1.3
ENST00000369221
3
ENSE00001193593
chr10:
118306806-118306960
155
LIPP_HUMAN
16-67
52
1
B:1-50
51
1.4
ENST00000369221
4
ENSE00000986714
chr10:
118307872-118307994
123
LIPP_HUMAN
68-108
41
1
B:51-91
41
1.5a
ENST00000369221
5a
ENSE00001097273
chr10:
118310610-118310744
135
LIPP_HUMAN
109-153
45
1
B:92-136
45
1.6
ENST00000369221
6
ENSE00001148734
chr10:
118313239-118313350
112
LIPP_HUMAN
154-191
38
1
B:137-174
38
1.7
ENST00000369221
7
ENSE00001097277
chr10:
118314690-118314809
120
LIPP_HUMAN
191-231
41
1
B:174-214
41
1.8
ENST00000369221
8
ENSE00001097284
chr10:
118314900-118315019
120
LIPP_HUMAN
231-271
41
1
B:214-254
41
1.9
ENST00000369221
9
ENSE00001097280
chr10:
118315512-118315630
119
LIPP_HUMAN
271-310
40
1
B:254-293
40
1.10
ENST00000369221
10
ENSE00001097279
chr10:
118318666-118318795
130
LIPP_HUMAN
311-354
44
1
B:294-337
44
1.11
ENST00000369221
11
ENSE00001097275
chr10:
118319928-118320036
109
LIPP_HUMAN
354-390
37
1
B:337-373
37
1.12
ENST00000369221
12
ENSE00001097286
chr10:
118320984-118321148
165
LIPP_HUMAN
390-445
56
1
B:373-429 (gaps)
57
1.13
ENST00000369221
13
ENSE00001097276
chr10:
118327247-118327367
121
LIPP_HUMAN
445-465
21
1
B:429-449
21
[
close EXON info
]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1lpab1 (B:337-449)
2a: SCOP_d1lpab2 (B:1-336)
3a: SCOP_d1lpaa1 (A:6-44)
3b: SCOP_d1lpaa2 (A:45-90)
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)
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)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
Colipase-binding domain
(8)
Protein domain
:
Pancreatic lipase, C-terminal domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1lpab1
B:337-449
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
Pancreatic lipase, N-terminal domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1lpab2
B:1-336
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Colipase-like
(7)
Family
:
Colipase-like
(7)
Protein domain
:
(Pro)colipase
(6)
Pig (Sus scrofa) [TaxId: 9823]
(6)
3a
d1lpaa1
A:6-44
3b
d1lpaa2
A:45-90
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1lpaB01 (B:1-337)
2a: CATH_1lpaA00 (A:6-90)
3a: CATH_1lpaB02 (B:338-448)
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
1lpaB01
B:1-337
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Lipase, subunit A
(8)
Homologous Superfamily
:
Lipase, subunit A
(8)
Pig (Sus scrofa)
(5)
2a
1lpaA00
A:6-90
Architecture
:
Sandwich
(5577)
Topology
:
Lipoxygenase-1
(46)
Homologous Superfamily
:
Lipoxygenase-1
(44)
Pig (Sus scrofa)
(3)
3a
1lpaB02
B:338-448
[
close CATH info
]
Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Lipase_1lpaB01 (B:1-335)
2a: PFAM_PLAT_1lpaB02 (B:340-446)
3a: PFAM_Colipase_1lpaA01 (A:6-43)
4a: PFAM_Colipase_C_1lpaA02 (A:45-89)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Lipase
(7)
Homo sapiens (Human)
(6)
1a
Lipase-1lpaB01
B:1-335
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Homo sapiens (Human)
(7)
2a
PLAT-1lpaB02
B:340-446
Clan
:
no clan defined [family: Colipase]
(5)
Family
:
Colipase
(5)
Sus scrofa (Pig)
(5)
3a
Colipase-1lpaA01
A:6-43
Clan
:
no clan defined [family: Colipase_C]
(5)
Family
:
Colipase_C
(5)
Sus scrofa (Pig)
(5)
4a
Colipase_C-1lpaA02
A:45-89
[
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Atom Selection
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Nucleic
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Hetero
Ligand
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Protein & NOT Site
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Asymmetric Unit 1
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