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1LF7
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN COMPLEMENT PROTEIN C8GAMMA AT 1.2 A RESOLUTION
Authors
:
E. Ortlund, C. L. Parker, S. F. Schreck, S. Ginell, W. Minor, J. M. Sodetz, L. Lebioda
Date
:
10 Apr 02 (Deposition) - 12 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipocalin, Beta Barrel, Calyx, Complement, Mac, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ortlund, C. L. Parker, S. F. Schreck, S. Ginell, W. Minor, J. M. Sodetz, L. Lebioda
Crystal Structure Of Human Complement Protein C8Gamma At 1. 2 A Resolution Reveals A Lipocalin Fold And A Distinct Ligand Binding Site.
Biochemistry V. 41 7030 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:33 , ARG A:70 , ARG A:122 , LYS A:129 , PHE A:162 , HOH A:386 , HOH A:390 , HOH A:468
BINDING SITE FOR RESIDUE CIT A 200
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014668 (R49Q, chain A, )
2: VAR_044319 (G98G, chain A, )
3: VAR_014669 (H104N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014668
R
69
Q
CO8G_HUMAN
Polymorphism
17614
A
R
49
Q
2
UniProt
VAR_044319
D
118
G
CO8G_HUMAN
Polymorphism
7850844
A
G
98
G
3
UniProt
VAR_014669
H
124
N
CO8G_HUMAN
Polymorphism
17613
A
H
104
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:21-34)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
CO8G_HUMAN
41-54
1
A:21-34
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Exons
(7, 7)
Info
All Exons
Exon 1.1b (A:10-26)
Exon 1.2 (A:27-72 (gaps))
Exon 1.3 (A:72-96)
Exon 1.4a (A:96-132)
Exon 1.6c (A:132-166)
Exon 1.7a (A:166-179)
Exon 1.7c (A:179-180)
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/1.6c
6: Boundary 1.6c/1.7a
7: Boundary 1.7a/1.7c
8: Boundary 1.7c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000224181
1b
ENSE00001834506
chr9:
139839713-139839910
198
CO8G_HUMAN
1-46
46
1
A:10-26
17
1.2
ENST00000224181
2
ENSE00000734163
chr9:
139840086-139840222
137
CO8G_HUMAN
47-92
46
1
A:27-72 (gaps)
46
1.3
ENST00000224181
3
ENSE00001194952
chr9:
139840381-139840451
71
CO8G_HUMAN
92-116
25
1
A:72-96
25
1.4a
ENST00000224181
4a
ENSE00000734168
chr9:
139840537-139840644
108
CO8G_HUMAN
116-152
37
1
A:96-132
37
1.6c
ENST00000224181
6c
ENSE00000734170
chr9:
139840917-139841018
102
CO8G_HUMAN
152-186
35
1
A:132-166
35
1.7a
ENST00000224181
7a
ENSE00001407255
chr9:
139841103-139841141
39
CO8G_HUMAN
186-199
14
1
A:166-179
14
1.7c
ENST00000224181
7c
ENSE00001902507
chr9:
139841220-139841419
200
CO8G_HUMAN
199-202
4
1
A:179-180
2
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1lf7a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Complement protein C8gamma
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1lf7a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1lf7A00 (A:10-180)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
1lf7A00
A:10-180
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lipocalin_1lf7A01 (A:28-166)
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Clan
:
Calycin
(163)
Family
:
Lipocalin
(123)
Homo sapiens (Human)
(41)
1a
Lipocalin-1lf7A01
A:28-166
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Chain A
Asymmetric Unit 1
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