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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1L9L
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES
Authors
:
D. H. Anderson, M. R. Sawaya, D. Cascio, W. Ernst, A. Krensky, R. Modlin, D. Eisenberg
Date
:
25 Mar 02 (Deposition) - 06 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.92
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Granulysin, Saposin Fold, Membrane-Lytic, Antimicrobial Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. H. Anderson, M. R. Sawaya, D. Cascio, W. Ernst, R. Modlin, A. Krensky, D. Eisenberg
Granulysin Crystal Structure And A Structure-Derived Lytic Mechanism
J. Mol. Biol. V. 325 355 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ETHANOL (EOHa)
1b: ETHANOL (EOHb)
1c: ETHANOL (EOHc)
2a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EOH
3
Ligand/Ion
ETHANOL
2
MPO
1
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:39 , ARG A:42 , ARG A:51 , HOH A:1011 , HOH A:1045 , HOH A:1076 , HOH A:1100
BINDING SITE FOR RESIDUE SO4 A 81
2
AC2
SOFTWARE
ARG A:2 , ARG A:38 , ASN A:47 , ARG A:51 , HOH A:1001 , HOH A:1091
BINDING SITE FOR RESIDUE SO4 A 82
3
AC3
SOFTWARE
ARG A:2 , HOH A:1061 , HOH A:1099
BINDING SITE FOR RESIDUE SO4 A 83
4
AC4
SOFTWARE
ARG A:42 , ARG A:46 , HOH A:1102
BINDING SITE FOR RESIDUE SO4 A 84
5
AC5
SOFTWARE
GLY A:1 , ARG A:35 , ARG A:42 , ARG A:50 , LEU A:73 , ARG A:74
BINDING SITE FOR RESIDUE MPO A 111
6
AC6
SOFTWARE
LYS A:15 , VAL A:18 , ASP A:19
BINDING SITE FOR RESIDUE EOH A 101
7
AC7
SOFTWARE
ARG A:55 , ILE A:69 , ASP A:72 , LEU A:73 , HOH A:1028
BINDING SITE FOR RESIDUE EOH A 102
8
AC8
SOFTWARE
LYS A:16 , GLN A:58 , HOH A:1018 , HOH A:1064 , HOH A:1072
BINDING SITE FOR RESIDUE EOH A 103
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_027868 (I57I, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027868
T
119
I
GNLY_HUMAN
Polymorphism
11127
A
I
57
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (A:1-23)
Exon 1.4c (A:24-74)
View:
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All Exon Boundaries
1: Boundary 1.2p/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/1.6d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000263863
2a
ENSE00001919524
chr2:
85921414-85921593
180
GNLY_HUMAN
1-18
18
0
-
-
1.2p
ENST00000263863
2p
ENSE00001135227
chr2:
85922443-85922546
104
GNLY_HUMAN
18-52
35
0
-
-
1.3a
ENST00000263863
3a
ENSE00000767621
chr2:
85923081-85923179
99
GNLY_HUMAN
53-85
33
1
A:1-23
23
1.4c
ENST00000263863
4c
ENSE00000799876
chr2:
85924629-85924800
172
GNLY_HUMAN
86-143
58
1
A:24-74
51
1.6d
ENST00000263863
6d
ENSE00001886592
chr2:
85925687-85925977
291
GNLY_HUMAN
143-145
3
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l9la_ (A:)
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Classes
(
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Folds
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Saposin-like
(21)
Superfamily
:
Saposin
(17)
Family
:
NKL-like
(13)
Protein domain
:
Granulysin, NKG5 protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1l9la_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1l9lA00 (A:1-74)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
NK-Lysin
(9)
Homologous Superfamily
:
NK-Lysin
(9)
Human (Homo sapiens)
(7)
1a
1l9lA00
A:1-74
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SapB_2_1l9lA01 (A:42-74)
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Label:
Clans
(
)
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: SapB_2]
(17)
Family
:
SapB_2
(17)
Homo sapiens (Human)
(11)
1a
SapB_2-1l9lA01
A:42-74
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (51 KB)
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