PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1L7G
Biol. Unit 1
Info
Asym.Unit (86 KB)
Biol.Unit 1 (305 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF E119G MUTANT INFLUENZA VIRUS NEURAMINIDASE IN COMPLEX WITH BCX-1812
Authors
:
B. J. Smith, J. L. Mckimm-Breshkin, M. Mcdonald, R. T. Fernley, J. N. Var P. M. Colman
Date
:
15 Mar 02 (Deposition) - 29 May 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Neuraminidase, Hydrolase, Influenza, Glycosylated Protein, Bcx-1812, E119G Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Smith, J. L. Mckimm-Breshkin, M. Mcdonald, R. T. Fernley, J. N. Varghese, P. M. Colman
Structural Studies Of The Resistance Of Influenza Virus Neuramindase To Inhibitors.
J. Med. Chem. V. 45 2207 2002
[
close entry info
]
Hetero Components
(5, 56)
Info
All Hetero Components
1a: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCZ
4
Ligand/Ion
3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID
2
BMA
4
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
GOL
12
Ligand/Ion
GLYCEROL
5
MAN
16
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:200 , ARG A:220 , LEU A:453 , GLY A:454 , GLN A:455 , NAG A:1201 , HOH A:1231 , HOH A:1256 , HOH A:1546 , HOH A:1607 , HOH A:1608
BINDING SITE FOR RESIDUE NAG A 1200
02
AC2
SOFTWARE
GLN A:392 , GLY A:394 , NAG A:1200 , BMA A:1202 , HOH A:1231 , HOH A:1286 , HOH A:1339 , HOH A:1476 , HOH A:1599
BINDING SITE FOR RESIDUE NAG A 1201
03
AC3
SOFTWARE
LEU A:377 , THR A:391 , GLN A:392 , GLY A:394 , NAG A:1201 , MAN A:1203 , MAN A:1206 , HOH A:1339 , HOH A:1428 , HOH A:1548 , HOH A:1618
BINDING SITE FOR RESIDUE BMA A 1202
04
AC4
SOFTWARE
ARG A:364 , GLU A:375 , BMA A:1202 , MAN A:1204 , MAN A:1205 , HOH A:1377 , HOH A:1423 , HOH A:1583 , HOH A:1612 , HOH A:1730
BINDING SITE FOR RESIDUE MAN A 1203
05
AC5
SOFTWARE
ASP A:330 , ARG A:364 , LYS A:389 , PRO A:390 , MAN A:1203 , MAN A:1205 , HOH A:1434 , HOH A:1630 , HOH A:1759 , HOH A:1771
BINDING SITE FOR RESIDUE MAN A 1204
06
AC6
SOFTWARE
ARG A:327 , ASN A:329 , ASP A:330 , ARG A:364 , ILE A:366 , ILE A:368 , MAN A:1203 , MAN A:1204 , HOH A:1271 , HOH A:1292 , HOH A:1537
BINDING SITE FOR RESIDUE MAN A 1205
07
AC7
SOFTWARE
BMA A:1202 , HOH A:1518 , HOH A:1542 , HOH A:1634 , HOH A:1646 , HOH A:1770
BINDING SITE FOR RESIDUE MAN A 1206
08
AC8
SOFTWARE
ASP A:83 , PHE A:84 , ASN A:86 , ASN A:234 , NAG A:1087 , HOH A:1464 , HOH A:1490
BINDING SITE FOR RESIDUE NAG A 1086
09
AC9
SOFTWARE
ASP A:83 , NAG A:1086 , HOH A:1628 , HOH A:1763
BINDING SITE FOR RESIDUE NAG A 1087
10
BC1
SOFTWARE
ASN A:146 , TRP A:437 , HOH A:1517 , HOH A:1582 , HOH A:1601 , HOH A:1605
BINDING SITE FOR RESIDUE NAG A 1146
11
BC2
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , ASN A:347 , HOH A:1314 , HOH A:1318
BINDING SITE FOR RESIDUE CA A 999
12
BC3
SOFTWARE
HOH A:1437 , HOH A:1613
BINDING SITE FOR RESIDUE CA A 998
13
BC4
SOFTWARE
ARG A:118 , LEU A:134 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:178 , GLU A:227 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:1241 , HOH A:1503 , HOH A:1604
BINDING SITE FOR RESIDUE BCZ A 801
14
BC5
SOFTWARE
LYS A:336 , CYS A:337 , ASN A:338 , ASP A:339 , HOH A:1589
BINDING SITE FOR RESIDUE GOL A 701
15
BC6
SOFTWARE
ARG A:107 , HIS A:144 , THR A:148 , HOH A:1512 , HOH A:1690
BINDING SITE FOR RESIDUE GOL A 702
16
BC7
SOFTWARE
ALA A:413 , GLU A:414 , CYS A:417 , ARG A:419 , HOH A:1280 , HOH A:1364 , HOH A:1365 , HOH A:1420 , HOH A:1457 , HOH A:1485
BINDING SITE FOR RESIDUE GOL A 703
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l7ga_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1l7ga_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1l7gA00 (A:82-468)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320. Strain: a/nws/tern/australia/g70c/75
(3)
1a
1l7gA00
A:82-468
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Neur_1l7gA01 (A:82-466)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza A virus (strain A/Tern/Australia/G70C/1975 H11N9)
(23)
1a
Neur-1l7gA01
A:82-466
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (305 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1L7G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
