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1L6L
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 10 (33 KB)
Biol.Unit 11 (33 KB)
Biol.Unit 12 (34 KB)
Biol.Unit 13 (33 KB)
Biol.Unit 14 (33 KB)
Biol.Unit 15 (34 KB)
Biol.Unit 16 (33 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (34 KB)
Biol.Unit 5 (33 KB)
Biol.Unit 6 (33 KB)
Biol.Unit 7 (36 KB)
Biol.Unit 8 (33 KB)
Biol.Unit 9 (33 KB)
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Title
:
STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE COMPLEX PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID INTERACTIONS
Authors
:
M. S. Kumar, M. Carson, M. M. Hussain, H. M. K. Murthy
Date
:
11 Mar 02 (Deposition) - 02 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,P,Q,S,T,U,V,W,X,Y,Z,1,2,3,4,5,6,7,8
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: P,Q (1x)
Biol. Unit 9: S,T (1x)
Biol. Unit 10: U,V (1x)
Biol. Unit 11: W,X (1x)
Biol. Unit 12: Y,Z (1x)
Biol. Unit 13: 1,2 (1x)
Biol. Unit 14: 3,4 (1x)
Biol. Unit 15: 5,6 (1x)
Biol. Unit 16: 7,8 (1x)
Keywords
:
Apolipoprotein, High Density Lipid, Helix, Apolipoprotein A- Ii, Cholesterol Metabolism, Lipid Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Kumar, M. Carson, M. M. Hussain, H. M. Murthy
Structures Of Apolipoprotein A-Ii And A Lipid-Surrogate Complex Provide Insights Into Apolipoprotein-Lipid Interactions.
Biochemistry V. 41 11681 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 64)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1aa: B-OCTYLGLUCOSIDE (BOGaa)
1ab: B-OCTYLGLUCOSIDE (BOGab)
1ac: B-OCTYLGLUCOSIDE (BOGac)
1ad: B-OCTYLGLUCOSIDE (BOGad)
1ae: B-OCTYLGLUCOSIDE (BOGae)
1af: B-OCTYLGLUCOSIDE (BOGaf)
1ag: B-OCTYLGLUCOSIDE (BOGag)
1ah: B-OCTYLGLUCOSIDE (BOGah)
1ai: B-OCTYLGLUCOSIDE (BOGai)
1aj: B-OCTYLGLUCOSIDE (BOGaj)
1ak: B-OCTYLGLUCOSIDE (BOGak)
1al: B-OCTYLGLUCOSIDE (BOGal)
1am: B-OCTYLGLUCOSIDE (BOGam)
1an: B-OCTYLGLUCOSIDE (BOGan)
1ao: B-OCTYLGLUCOSIDE (BOGao)
1ap: B-OCTYLGLUCOSIDE (BOGap)
1aq: B-OCTYLGLUCOSIDE (BOGaq)
1ar: B-OCTYLGLUCOSIDE (BOGar)
1as: B-OCTYLGLUCOSIDE (BOGas)
1at: B-OCTYLGLUCOSIDE (BOGat)
1au: B-OCTYLGLUCOSIDE (BOGau)
1av: B-OCTYLGLUCOSIDE (BOGav)
1aw: B-OCTYLGLUCOSIDE (BOGaw)
1ax: B-OCTYLGLUCOSIDE (BOGax)
1ay: B-OCTYLGLUCOSIDE (BOGay)
1az: B-OCTYLGLUCOSIDE (BOGaz)
1b: B-OCTYLGLUCOSIDE (BOGb)
1ba: B-OCTYLGLUCOSIDE (BOGba)
1bb: B-OCTYLGLUCOSIDE (BOGbb)
1bc: B-OCTYLGLUCOSIDE (BOGbc)
1bd: B-OCTYLGLUCOSIDE (BOGbd)
1be: B-OCTYLGLUCOSIDE (BOGbe)
1bf: B-OCTYLGLUCOSIDE (BOGbf)
1bg: B-OCTYLGLUCOSIDE (BOGbg)
1bh: B-OCTYLGLUCOSIDE (BOGbh)
1bi: B-OCTYLGLUCOSIDE (BOGbi)
1bj: B-OCTYLGLUCOSIDE (BOGbj)
1bk: B-OCTYLGLUCOSIDE (BOGbk)
1bl: B-OCTYLGLUCOSIDE (BOGbl)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
1g: B-OCTYLGLUCOSIDE (BOGg)
1h: B-OCTYLGLUCOSIDE (BOGh)
1i: B-OCTYLGLUCOSIDE (BOGi)
1j: B-OCTYLGLUCOSIDE (BOGj)
1k: B-OCTYLGLUCOSIDE (BOGk)
1l: B-OCTYLGLUCOSIDE (BOGl)
1m: B-OCTYLGLUCOSIDE (BOGm)
1n: B-OCTYLGLUCOSIDE (BOGn)
1o: B-OCTYLGLUCOSIDE (BOGo)
1p: B-OCTYLGLUCOSIDE (BOGp)
1q: B-OCTYLGLUCOSIDE (BOGq)
1r: B-OCTYLGLUCOSIDE (BOGr)
1s: B-OCTYLGLUCOSIDE (BOGs)
1t: B-OCTYLGLUCOSIDE (BOGt)
1u: B-OCTYLGLUCOSIDE (BOGu)
1v: B-OCTYLGLUCOSIDE (BOGv)
1w: B-OCTYLGLUCOSIDE (BOGw)
1x: B-OCTYLGLUCOSIDE (BOGx)
1y: B-OCTYLGLUCOSIDE (BOGy)
1z: B-OCTYLGLUCOSIDE (BOGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
64
Ligand/Ion
B-OCTYLGLUCOSIDE
[
close Hetero Component info
]
Sites
(64, 64)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:15 , TYR B:14 , CYS I:6 , VAL I:7 , GLU I:8 , SER I:9 , LEU I:10 , HOH I:1624 , LEU J:10
BINDING SITE FOR RESIDUE BOG I 1601
02
AC2
SOFTWARE
VAL B:18 , TYR B:21 , GLY B:22 , TYR I:14 , PHE I:15 , VAL I:18
BINDING SITE FOR RESIDUE BOG B 1602
03
AC3
SOFTWARE
GLU A:8 , TYR A:14 , HOH A:1612 , PHE F:15 , GLU J:4 , VAL J:7 , GLU J:8
BINDING SITE FOR RESIDUE BOG A 1603
04
AC4
SOFTWARE
VAL A:29 , PRO A:32 , GLU A:33 , ALA A:36 , GLU A:37 , HOH A:1613 , HOH A:1634 , LYS B:28 , BOG I:1605 , TYR J:21 , LEU J:25
BINDING SITE FOR RESIDUE BOG A 1604
05
AC5
SOFTWARE
BOG A:1604 , VAL B:29 , GLU B:33 , TYR I:21 , GLY I:22 , LEU I:25 , LYS I:28 , HOH I:1608 , HOH I:1620 , HOH I:1633
BINDING SITE FOR RESIDUE BOG I 1605
06
AC6
SOFTWARE
TYR A:41 , ALA B:38 , TYR B:41 , PHE B:42 , SER B:45 , SER I:40 , TYR I:41 , LYS I:44 , HOH I:1628
BINDING SITE FOR RESIDUE BOG B 1606
07
AC7
SOFTWARE
GLN B:48 , GLN I:48 , GLN J:48 , LEU J:49 , LEU J:52
BINDING SITE FOR RESIDUE BOG J 1607
08
AC8
SOFTWARE
PHE A:63 , HOH B:1635 , GLU J:59 , LEU J:60 , PHE J:63 , LEU J:64
BINDING SITE FOR RESIDUE BOG J 1608
09
AC9
SOFTWARE
LEU B:60 , PHE B:63 , LEU B:64 , TYR B:66 , ASN I:62 , PHE I:63 , TYR I:66 , GLU I:69 , PHE J:63
BINDING SITE FOR RESIDUE BOG B 1609
10
BC1
SOFTWARE
GLU C:8 , PHE C:15 , VAL D:7 , LEU D:10 , TYR D:14 , HOH D:1630 , GLU K:8 , VAL K:11 , PHE K:15 , THR K:19 , HOH K:238 , HOH K:1336 , LEU L:10
BINDING SITE FOR RESIDUE BOG K 1610
11
BC2
SOFTWARE
GLY D:22 , LEU D:25 , MET D:26 , LYS D:28 , VAL D:29 , LEU K:25 , MET K:26 , VAL K:29 , HOH K:602
BINDING SITE FOR RESIDUE BOG D 1612
12
BC3
SOFTWARE
PHE C:42 , ALA D:38 , SER D:40 , LYS D:44 , TYR L:41
BINDING SITE FOR RESIDUE BOG D 1613
13
BC4
SOFTWARE
LYS C:44 , SER C:45 , GLU C:47 , GLN C:48 , HOH C:1617 , GLN L:48 , LEU L:49 , LEU L:52 , ILE L:53
BINDING SITE FOR RESIDUE BOG C 1614
14
BC5
SOFTWARE
GLU C:59 , LEU C:60 , ASN C:62 , PHE C:63 , TYR C:66 , GLU D:59 , PHE D:63 , LEU K:60 , PHE K:63 , GLU L:59 , LEU L:60 , PHE L:63 , LEU L:64 , PHE L:67
BINDING SITE FOR RESIDUE BOG L 1615
15
BC6
SOFTWARE
TYR K:66 , LEU K:70
BINDING SITE FOR RESIDUE BOG K 1616
16
BC7
SOFTWARE
VAL E:7 , GLU E:8 , GLU N:8 , VAL N:11 , PHE N:15
BINDING SITE FOR RESIDUE BOG N 1617
17
BC8
SOFTWARE
GLU E:8 , TYR E:14 , PHE E:15 , VAL N:11 , TYR N:14 , PHE N:15 , HOH N:1628
BINDING SITE FOR RESIDUE BOG N 1618
18
BC9
SOFTWARE
VAL E:18 , THR E:19 , HOH E:1662 , TYR F:14 , VAL F:18 , TYR F:21 , HOH F:678 , THR M:19 , GLY M:22 , LEU M:25 , TYR N:21 , GLY N:22
BINDING SITE FOR RESIDUE BOG F 1619
19
CC1
SOFTWARE
LYS M:23 , ASP M:24 , LEU M:25 , MET M:26 , GLU M:27 , LYS M:28 , HOH M:1651
BINDING SITE FOR RESIDUE BOG M 1620
20
CC2
SOFTWARE
ILE M:53 , LYS M:54 , ALA M:56 , GLY M:57 , LYS N:55
BINDING SITE FOR RESIDUE BOG M 1621
21
CC3
SOFTWARE
THR N:50 , ILE N:53 , LYS N:54 , GLY N:57 , HOH N:1626 , HOH N:1656
BINDING SITE FOR RESIDUE BOG N 1622
22
CC4
SOFTWARE
ASN E:62 , TYR E:66 , HOH E:1626 , HOH E:1650 , HOH E:1657 , PHE N:63 , LEU N:64 , PHE N:67 , BOG N:1624 , HOH N:1649
BINDING SITE FOR RESIDUE BOG E 1623
23
CC5
SOFTWARE
ASN E:62 , PHE E:63 , TYR E:66 , BOG E:1623 , TYR M:66 , PHE M:67 , VAL M:68 , LEU M:70 , GLY M:71 , PHE N:63 , PHE N:67 , LEU N:70 , HOH N:1680
BINDING SITE FOR RESIDUE BOG N 1624
24
CC6
SOFTWARE
PHE E:67 , GLY E:71 , LEU F:70 , LEU M:70 , GLY M:71 , THR M:72 , PRO M:74 , ALA M:75 , PHE N:67
BINDING SITE FOR RESIDUE BOG M 1625
25
CC7
SOFTWARE
VAL G:11 , VAL H:7 , GLU H:8 , LEU H:10 , VAL H:11 , HOH H:1643 , LEU P:10 , VAL P:11 , TYR P:14
BINDING SITE FOR RESIDUE BOG H 1626
26
CC8
SOFTWARE
TYR G:14 , PHE G:15 , VAL P:11 , PHE P:15 , VAL Q:7 , LEU Q:10 , VAL Q:11 , TYR Q:14 , HOH Q:1657 , HOH Q:1658
BINDING SITE FOR RESIDUE BOG Q 1627
27
CC9
SOFTWARE
THR G:19 , TYR G:21 , HOH G:1665 , BOG H:1629 , PHE P:15 , TYR Q:14 , PHE Q:15 , THR Q:17 , VAL Q:18 , THR Q:19 , HOH Q:1652 , HOH Q:1654 , HOH Q:1660
BINDING SITE FOR RESIDUE BOG Q 1628
28
DC1
SOFTWARE
VAL H:18 , TYR H:21 , GLY H:22 , LEU H:25 , TYR P:21 , GLY P:22 , LEU P:25 , TYR Q:21 , BOG Q:1628
BINDING SITE FOR RESIDUE BOG H 1629
29
DC2
SOFTWARE
ALA G:38 , PHE G:42 , GLU H:37 , SER H:40 , TYR H:41 , LYS H:44 , GLN H:48 , TYR P:41 , GLU Q:37 , ALA Q:38 , TYR Q:41 , SER Q:45
BINDING SITE FOR RESIDUE BOG Q 1630
30
DC3
SOFTWARE
GLN H:48 , LEU H:49 , LEU H:52 , HOH H:1632 , GLN P:48 , PRO P:51 , LEU P:52 , LYS P:55 , GLN Q:48 , LEU Q:52
BINDING SITE FOR RESIDUE BOG H 1631
31
DC4
SOFTWARE
GLU H:59 , LEU H:60 , PHE H:63 , LEU H:64 , ASN P:62 , PHE P:63 , TYR P:66
BINDING SITE FOR RESIDUE BOG P 1632
32
DC5
SOFTWARE
PHE G:63 , SER G:65 , TYR G:66 , GLU G:69 , HOH G:1668 , HOH G:1670 , HOH G:1675 , PHE H:63 , LEU Q:64 , PHE Q:67
BINDING SITE FOR RESIDUE BOG G 1633
33
DC6
SOFTWARE
TYR G:66 , GLU G:69 , LEU G:70 , HOH G:1676 , HOH G:1695 , HOH G:1698 , HOH G:1700 , PHE H:67 , LEU H:70 , PHE Q:67
BINDING SITE FOR RESIDUE BOG G 1634
34
DC7
SOFTWARE
TYR 1:14 , PHE 1:15 , VAL T:18 , TYR T:21 , GLY T:22 , HOH T:80
BINDING SITE FOR RESIDUE BOG T 1702
35
DC8
SOFTWARE
GLU 1:8 , VAL 2:7 , TYR S:14 , PHE X:15
BINDING SITE FOR RESIDUE BOG 2 1703
36
DC9
SOFTWARE
BOG 1:1705 , TYR 2:21 , LEU 2:25 , VAL S:29 , PRO S:32 , GLU S:33 , ALA S:36 , GLU S:37 , HOH S:1723 , LYS T:28
BINDING SITE FOR RESIDUE BOG S 1704
37
EC1
SOFTWARE
TYR 1:21 , GLY 1:22 , LEU 1:25 , LYS 1:28 , BOG S:1704 , VAL T:29 , GLU T:33
BINDING SITE FOR RESIDUE BOG 1 1705
38
EC2
SOFTWARE
SER 1:40 , TYR 1:41 , LYS 1:44 , HOH 1:1710 , ALA 2:38 , TYR S:41 , ALA T:38 , TYR T:41 , PHE T:42 , SER T:45
BINDING SITE FOR RESIDUE BOG T 1706
39
EC3
SOFTWARE
GLN 1:48 , GLN 2:48 , LEU 2:49 , LEU 2:52 , GLN T:48
BINDING SITE FOR RESIDUE BOG 1 1707
40
EC4
SOFTWARE
GLU 2:59 , LEU 2:60 , PHE 2:63 , HOH 2:1734 , ASN S:62 , PHE S:63
BINDING SITE FOR RESIDUE BOG 2 1708
41
EC5
SOFTWARE
ASN 1:62 , PHE 1:63 , TYR 1:66 , GLU 1:69 , PHE 2:63 , LEU T:60 , PHE T:63 , LEU T:64 , TYR T:66
BINDING SITE FOR RESIDUE BOG 1 1709
42
EC6
SOFTWARE
GLU 3:8 , VAL 3:11 , PHE 3:15 , LEU 4:10 , THR 4:17 , GLU U:8 , VAL U:11 , PHE U:15 , LEU V:10
BINDING SITE FOR RESIDUE BOG U 1710
43
EC7
SOFTWARE
GLY 3:22 , LEU 3:25 , MET 3:26 , VAL 3:29 , LYS 4:28 , LEU V:25 , MET V:26 , VAL V:29
BINDING SITE FOR RESIDUE BOG 3 1712
44
EC8
SOFTWARE
SER 4:45 , GLN 4:48 , LEU 4:49 , LEU 4:52 , LYS U:44 , GLU U:47 , GLN U:48
BINDING SITE FOR RESIDUE BOG 4 1714
45
EC9
SOFTWARE
LEU 3:60 , GLU 4:59 , LEU 4:60 , PHE 4:67 , THR U:58 , GLU U:59 , ASN U:62 , PHE U:63 , TYR U:66 , HOH U:1727 , HOH U:1729
BINDING SITE FOR RESIDUE BOG U 1715
46
FC1
SOFTWARE
TYR 3:66 , HOH V:734
BINDING SITE FOR RESIDUE BOG 3 1716
47
FC2
SOFTWARE
GLU 5:8 , GLU 6:8 , VAL 6:11 , HOH 6:1727 , PRO W:5 , HOH W:762
BINDING SITE FOR RESIDUE BOG 6 1717
48
FC3
SOFTWARE
VAL 6:11 , TYR W:14 , PHE W:15 , HOH W:405
BINDING SITE FOR RESIDUE BOG W 1718
49
FC4
SOFTWARE
TYR 5:21 , LEU 5:25 , HOH 5:724 , LEU 6:25 , THR W:19 , TYR X:21 , LEU X:25
BINDING SITE FOR RESIDUE BOG 5 1719
50
FC5
SOFTWARE
LYS 5:23 , ASP 5:24 , GLU 5:27 , LYS 5:28 , LYS 5:30 , HOH 5:291
BINDING SITE FOR RESIDUE BOG 5 1720
51
FC6
SOFTWARE
ILE 5:53 , LYS 5:54 , ALA 5:56 , GLY 5:57 , HOH 5:868 , PRO 6:51
BINDING SITE FOR RESIDUE BOG 5 1721
52
FC7
SOFTWARE
THR 6:50 , ILE 6:53 , LYS 6:54 , HOH 6:1728
BINDING SITE FOR RESIDUE BOG 6 1722
53
FC8
SOFTWARE
BOG 5:1724 , PHE 6:63 , LEU 6:64 , PHE 6:67 , ASN W:62 , PHE W:63 , TYR W:66 , HOH W:271
BINDING SITE FOR RESIDUE BOG W 1723
54
FC9
SOFTWARE
TYR 5:66 , PHE 5:67 , LEU 5:70 , PHE 6:67 , PHE W:63 , TYR W:66 , PHE W:67 , GLU W:69 , BOG W:1723 , BOG X:1725
BINDING SITE FOR RESIDUE BOG 5 1724
55
GC1
SOFTWARE
GLN 5:73 , BOG 5:1724 , PHE W:67 , LEU W:70 , LEU X:70 , GLY X:71 , HOH X:1733 , HOH X:1742
BINDING SITE FOR RESIDUE BOG X 1725
56
GC2
SOFTWARE
LEU 7:10 , VAL 7:11 , TYR 7:14 , GLU Y:8 , VAL Y:11 , GLU Z:4 , VAL Z:7 , LEU Z:10 , VAL Z:11
BINDING SITE FOR RESIDUE BOG 7 1726
57
GC3
SOFTWARE
VAL 7:11 , PHE 7:15 , VAL 8:7 , LEU 8:10 , VAL 8:11 , TYR 8:14 , HOH 8:1785 , TYR Y:14 , PHE Y:15 , HOH Y:1754
BINDING SITE FOR RESIDUE BOG 8 1727
58
GC4
SOFTWARE
TYR 8:14 , PHE 8:15 , THR 8:17 , VAL 8:18 , THR 8:19 , THR Y:19
BINDING SITE FOR RESIDUE BOG 8 1728
59
GC5
SOFTWARE
GLY 7:22 , LEU 7:25 , THR 8:17 , TYR 8:21 , VAL Z:18 , TYR Z:21 , GLY Z:22 , LEU Z:25
BINDING SITE FOR RESIDUE BOG Z 1729
60
GC6
SOFTWARE
ALA 8:38 , TYR 8:41 , GLN 8:48 , ALA Y:38 , PHE Y:42 , GLN Y:48 , GLU Z:37 , SER Z:40 , TYR Z:41 , GLN Z:48 , HOH Z:1738
BINDING SITE FOR RESIDUE BOG Y 1730
61
GC7
SOFTWARE
GLN 7:48 , PRO 7:51 , LEU 7:52 , GLN Y:48 , GLN Z:48 , LEU Z:49 , LEU Z:52 , HOH Z:1750
BINDING SITE FOR RESIDUE BOG Z 1731
62
GC8
SOFTWARE
ASN 7:62 , PHE 7:63 , TYR 7:66 , PHE 7:67 , LEU Z:60 , PHE Z:63 , LEU Z:64 , HOH Z:1754
BINDING SITE FOR RESIDUE BOG Z 1732
63
GC9
SOFTWARE
PHE 7:67 , PHE 8:63 , PHE 8:67 , ASN Y:62 , PHE Y:63 , TYR Y:66 , GLU Y:69 , HOH Y:1748 , HOH Y:1753
BINDING SITE FOR RESIDUE BOG Y 1733
64
HC1
SOFTWARE
TYR Y:66 , PHE Y:67 , GLU Y:69 , LEU Y:70 , TYR Z:66 , PHE Z:67
BINDING SITE FOR RESIDUE BOG Y 1734
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(2, 64)
Info
All Exons
Exon 1.1j (1:4-39 (gaps) | 2:4-39 (gaps) | 3:...)
Exon 1.2f (1:39-77 | 2:39-77 | 3:39-77 | 4:39...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1g/1.1j
2: Boundary 1.1j/1.2f
3: Boundary 1.2f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000367990
1b
ENSE00001041701
chr1:
161193418-161193385
34
APOA2_HUMAN
-
0
0
-
-
1.1g
ENST00000367990
1g
ENSE00002171095
chr1:
161193215-161193140
76
APOA2_HUMAN
1-18
18
0
-
-
1.1j
ENST00000367990
1j
ENSE00001041702
chr1:
161192840-161192708
133
APOA2_HUMAN
18-62
45
32
1:4-39 (gaps)
2:4-39 (gaps)
3:2-39 (gaps)
4:2-39 (gaps)
5:2-39
6:2-39
7:2-39 (gaps)
8:2-39
A:4-39
B:4-39
C:2-39
D:2-39 (gaps)
E:2-39 (gaps)
F:2-39 (gaps)
G:2-39
H:2-39
I:4-39 (gaps)
J:4-39
K:2-39 (gaps)
L:2-39
M:2-39
N:2-39
P:2-39 (gaps)
Q:2-39
S:4-39
T:4-39
U:2-39
V:2-39 (gaps)
W:2-39 (gaps)
X:2-39 (gaps)
Y:2-39
Z:3-39 (gaps)
36
36
38
38
38
38
38
38
36
36
38
38
38
38
38
38
36
36
38
38
38
38
38
38
36
36
38
38
38
38
38
37
1.2f
ENST00000367990
2f
ENSE00001894959
chr1:
161192312-161192082
231
APOA2_HUMAN
62-100
39
32
1:39-77
2:39-77
3:39-77
4:39-77
5:39-77 (gaps)
6:39-77 (gaps)
7:39-75 (gaps)
8:39-75
A:39-77
B:39-77
C:39-77
D:39-77
E:39-77 (gaps)
F:39-77
G:39-75
H:39-75
I:39-77
J:39-77
K:39-77
L:39-77 (gaps)
M:39-77
N:39-77
P:39-75
Q:39-75 (gaps)
S:39-77
T:39-77
U:39-77
V:39-77
W:39-77 (gaps)
X:39-77
Y:39-75
Z:39-75
39
39
39
39
39
39
37
37
39
39
39
39
39
39
37
37
39
39
39
39
39
39
37
37
39
39
39
39
39
39
37
37
[
close EXON info
]
SCOP Domains
(1, 32)
Info
All SCOP Domains
1a: SCOP_d1l6l1_ (1:)
1b: SCOP_d1l6l2_ (2:)
1c: SCOP_d1l6l3_ (3:)
1d: SCOP_d1l6l4_ (4:)
1e: SCOP_d1l6l5_ (5:)
1f: SCOP_d1l6l6_ (6:)
1g: SCOP_d1l6l7_ (7:)
1h: SCOP_d1l6l8_ (8:)
1i: SCOP_d1l6la_ (A:)
1j: SCOP_d1l6lb_ (B:)
1k: SCOP_d1l6lc_ (C:)
1l: SCOP_d1l6ld_ (D:)
1m: SCOP_d1l6le_ (E:)
1n: SCOP_d1l6lf_ (F:)
1o: SCOP_d1l6lg_ (G:)
1p: SCOP_d1l6lh_ (H:)
1q: SCOP_d1l6li_ (I:)
1r: SCOP_d1l6lj_ (J:)
1s: SCOP_d1l6lk_ (K:)
1t: SCOP_d1l6ll_ (L:)
1u: SCOP_d1l6lm_ (M:)
1v: SCOP_d1l6ln_ (N:)
1w: SCOP_d1l6lp_ (P:)
1x: SCOP_d1l6lq_ (Q:)
1y: SCOP_d1l6ls_ (S:)
1z: SCOP_d1l6lt_ (T:)
1aa: SCOP_d1l6lu_ (U:)
1ab: SCOP_d1l6lv_ (V:)
1ac: SCOP_d1l6lw_ (W:)
1ad: SCOP_d1l6lx_ (X:)
1ae: SCOP_d1l6ly_ (Y:)
1af: SCOP_d1l6lz_ (Z:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Apolipoprotein A-II
(2)
Superfamily
:
Apolipoprotein A-II
(2)
Family
:
Apolipoprotein A-II
(2)
Protein domain
:
Apolipoprotein A-II
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1l6l1_
1:
1b
d1l6l2_
2:
1c
d1l6l3_
3:
1d
d1l6l4_
4:
1e
d1l6l5_
5:
1f
d1l6l6_
6:
1g
d1l6l7_
7:
1h
d1l6l8_
8:
1i
d1l6la_
A:
1j
d1l6lb_
B:
1k
d1l6lc_
C:
1l
d1l6ld_
D:
1m
d1l6le_
E:
1n
d1l6lf_
F:
1o
d1l6lg_
G:
1p
d1l6lh_
H:
1q
d1l6li_
I:
1r
d1l6lj_
J:
1s
d1l6lk_
K:
1t
d1l6ll_
L:
1u
d1l6lm_
M:
1v
d1l6ln_
N:
1w
d1l6lp_
P:
1x
d1l6lq_
Q:
1y
d1l6ls_
S:
1z
d1l6lt_
T:
1aa
d1l6lu_
U:
1ab
d1l6lv_
V:
1ac
d1l6lw_
W:
1ad
d1l6lx_
X:
1ae
d1l6ly_
Y:
1af
d1l6lz_
Z:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 32)
Info
all PFAM domains
1a: PFAM_ApoA_II_1l6lZ01 (Z:3-75)
1b: PFAM_ApoA_II_1l6lZ02 (Z:3-75)
1c: PFAM_ApoA_II_1l6lZ03 (Z:3-75)
1d: PFAM_ApoA_II_1l6lZ04 (Z:3-75)
1e: PFAM_ApoA_II_1l6lZ05 (Z:3-75)
1f: PFAM_ApoA_II_1l6lZ06 (Z:3-75)
1g: PFAM_ApoA_II_1l6lZ07 (Z:3-75)
1h: PFAM_ApoA_II_1l6lZ08 (Z:3-75)
1i: PFAM_ApoA_II_1l6lZ09 (Z:3-75)
1j: PFAM_ApoA_II_1l6lZ10 (Z:3-75)
1k: PFAM_ApoA_II_1l6lZ11 (Z:3-75)
1l: PFAM_ApoA_II_1l6lZ12 (Z:3-75)
1m: PFAM_ApoA_II_1l6lZ13 (Z:3-75)
1n: PFAM_ApoA_II_1l6lZ14 (Z:3-75)
1o: PFAM_ApoA_II_1l6lZ15 (Z:3-75)
1p: PFAM_ApoA_II_1l6lZ16 (Z:3-75)
1q: PFAM_ApoA_II_1l6lZ17 (Z:3-75)
1r: PFAM_ApoA_II_1l6lZ18 (Z:3-75)
1s: PFAM_ApoA_II_1l6lZ19 (Z:3-75)
1t: PFAM_ApoA_II_1l6lZ20 (Z:3-75)
1u: PFAM_ApoA_II_1l6lZ21 (Z:3-75)
1v: PFAM_ApoA_II_1l6lZ22 (Z:3-75)
1w: PFAM_ApoA_II_1l6lZ23 (Z:3-75)
1x: PFAM_ApoA_II_1l6lZ24 (Z:3-75)
1y: PFAM_ApoA_II_1l6lZ25 (Z:3-75)
1z: PFAM_ApoA_II_1l6lZ26 (Z:3-75)
1aa: PFAM_ApoA_II_1l6lZ27 (Z:3-75)
1ab: PFAM_ApoA_II_1l6lZ28 (Z:3-75)
1ac: PFAM_ApoA_II_1l6lZ29 (Z:3-75)
1ad: PFAM_ApoA_II_1l6lZ30 (Z:3-75)
1ae: PFAM_ApoA_II_1l6lZ31 (Z:3-75)
1af: PFAM_ApoA_II_1l6lZ32 (Z:3-75)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ApoA-II]
(2)
Family
:
ApoA-II
(2)
Homo sapiens (Human)
(2)
1a
ApoA-II-1l6lZ01
Z:3-75
1b
ApoA-II-1l6lZ02
Z:3-75
1c
ApoA-II-1l6lZ03
Z:3-75
1d
ApoA-II-1l6lZ04
Z:3-75
1e
ApoA-II-1l6lZ05
Z:3-75
1f
ApoA-II-1l6lZ06
Z:3-75
1g
ApoA-II-1l6lZ07
Z:3-75
1h
ApoA-II-1l6lZ08
Z:3-75
1i
ApoA-II-1l6lZ09
Z:3-75
1j
ApoA-II-1l6lZ10
Z:3-75
1k
ApoA-II-1l6lZ11
Z:3-75
1l
ApoA-II-1l6lZ12
Z:3-75
1m
ApoA-II-1l6lZ13
Z:3-75
1n
ApoA-II-1l6lZ14
Z:3-75
1o
ApoA-II-1l6lZ15
Z:3-75
1p
ApoA-II-1l6lZ16
Z:3-75
1q
ApoA-II-1l6lZ17
Z:3-75
1r
ApoA-II-1l6lZ18
Z:3-75
1s
ApoA-II-1l6lZ19
Z:3-75
1t
ApoA-II-1l6lZ20
Z:3-75
1u
ApoA-II-1l6lZ21
Z:3-75
1v
ApoA-II-1l6lZ22
Z:3-75
1w
ApoA-II-1l6lZ23
Z:3-75
1x
ApoA-II-1l6lZ24
Z:3-75
1y
ApoA-II-1l6lZ25
Z:3-75
1z
ApoA-II-1l6lZ26
Z:3-75
1aa
ApoA-II-1l6lZ27
Z:3-75
1ab
ApoA-II-1l6lZ28
Z:3-75
1ac
ApoA-II-1l6lZ29
Z:3-75
1ad
ApoA-II-1l6lZ30
Z:3-75
1ae
ApoA-II-1l6lZ31
Z:3-75
1af
ApoA-II-1l6lZ32
Z:3-75
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