1L6L - JenaLib

Asymmetric Unit (64, 64)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:15 , TYR B:14 , CYS I:6 , VAL I:7 , GLU I:8 , SER I:9 , LEU I:10 , HOH I:1624 , LEU J:10	BINDING SITE FOR RESIDUE BOG I 1601
02	AC2	SOFTWARE	VAL B:18 , TYR B:21 , GLY B:22 , TYR I:14 , PHE I:15 , VAL I:18	BINDING SITE FOR RESIDUE BOG B 1602
03	AC3	SOFTWARE	GLU A:8 , TYR A:14 , HOH A:1612 , PHE F:15 , GLU J:4 , VAL J:7 , GLU J:8	BINDING SITE FOR RESIDUE BOG A 1603
04	AC4	SOFTWARE	VAL A:29 , PRO A:32 , GLU A:33 , ALA A:36 , GLU A:37 , HOH A:1613 , HOH A:1634 , LYS B:28 , BOG I:1605 , TYR J:21 , LEU J:25	BINDING SITE FOR RESIDUE BOG A 1604
05	AC5	SOFTWARE	BOG A:1604 , VAL B:29 , GLU B:33 , TYR I:21 , GLY I:22 , LEU I:25 , LYS I:28 , HOH I:1608 , HOH I:1620 , HOH I:1633	BINDING SITE FOR RESIDUE BOG I 1605
06	AC6	SOFTWARE	TYR A:41 , ALA B:38 , TYR B:41 , PHE B:42 , SER B:45 , SER I:40 , TYR I:41 , LYS I:44 , HOH I:1628	BINDING SITE FOR RESIDUE BOG B 1606
07	AC7	SOFTWARE	GLN B:48 , GLN I:48 , GLN J:48 , LEU J:49 , LEU J:52	BINDING SITE FOR RESIDUE BOG J 1607
08	AC8	SOFTWARE	PHE A:63 , HOH B:1635 , GLU J:59 , LEU J:60 , PHE J:63 , LEU J:64	BINDING SITE FOR RESIDUE BOG J 1608
09	AC9	SOFTWARE	LEU B:60 , PHE B:63 , LEU B:64 , TYR B:66 , ASN I:62 , PHE I:63 , TYR I:66 , GLU I:69 , PHE J:63	BINDING SITE FOR RESIDUE BOG B 1609
10	BC1	SOFTWARE	GLU C:8 , PHE C:15 , VAL D:7 , LEU D:10 , TYR D:14 , HOH D:1630 , GLU K:8 , VAL K:11 , PHE K:15 , THR K:19 , HOH K:238 , HOH K:1336 , LEU L:10	BINDING SITE FOR RESIDUE BOG K 1610
11	BC2	SOFTWARE	GLY D:22 , LEU D:25 , MET D:26 , LYS D:28 , VAL D:29 , LEU K:25 , MET K:26 , VAL K:29 , HOH K:602	BINDING SITE FOR RESIDUE BOG D 1612
12	BC3	SOFTWARE	PHE C:42 , ALA D:38 , SER D:40 , LYS D:44 , TYR L:41	BINDING SITE FOR RESIDUE BOG D 1613
13	BC4	SOFTWARE	LYS C:44 , SER C:45 , GLU C:47 , GLN C:48 , HOH C:1617 , GLN L:48 , LEU L:49 , LEU L:52 , ILE L:53	BINDING SITE FOR RESIDUE BOG C 1614
14	BC5	SOFTWARE	GLU C:59 , LEU C:60 , ASN C:62 , PHE C:63 , TYR C:66 , GLU D:59 , PHE D:63 , LEU K:60 , PHE K:63 , GLU L:59 , LEU L:60 , PHE L:63 , LEU L:64 , PHE L:67	BINDING SITE FOR RESIDUE BOG L 1615
15	BC6	SOFTWARE	TYR K:66 , LEU K:70	BINDING SITE FOR RESIDUE BOG K 1616
16	BC7	SOFTWARE	VAL E:7 , GLU E:8 , GLU N:8 , VAL N:11 , PHE N:15	BINDING SITE FOR RESIDUE BOG N 1617
17	BC8	SOFTWARE	GLU E:8 , TYR E:14 , PHE E:15 , VAL N:11 , TYR N:14 , PHE N:15 , HOH N:1628	BINDING SITE FOR RESIDUE BOG N 1618
18	BC9	SOFTWARE	VAL E:18 , THR E:19 , HOH E:1662 , TYR F:14 , VAL F:18 , TYR F:21 , HOH F:678 , THR M:19 , GLY M:22 , LEU M:25 , TYR N:21 , GLY N:22	BINDING SITE FOR RESIDUE BOG F 1619
19	CC1	SOFTWARE	LYS M:23 , ASP M:24 , LEU M:25 , MET M:26 , GLU M:27 , LYS M:28 , HOH M:1651	BINDING SITE FOR RESIDUE BOG M 1620
20	CC2	SOFTWARE	ILE M:53 , LYS M:54 , ALA M:56 , GLY M:57 , LYS N:55	BINDING SITE FOR RESIDUE BOG M 1621
21	CC3	SOFTWARE	THR N:50 , ILE N:53 , LYS N:54 , GLY N:57 , HOH N:1626 , HOH N:1656	BINDING SITE FOR RESIDUE BOG N 1622
22	CC4	SOFTWARE	ASN E:62 , TYR E:66 , HOH E:1626 , HOH E:1650 , HOH E:1657 , PHE N:63 , LEU N:64 , PHE N:67 , BOG N:1624 , HOH N:1649	BINDING SITE FOR RESIDUE BOG E 1623
23	CC5	SOFTWARE	ASN E:62 , PHE E:63 , TYR E:66 , BOG E:1623 , TYR M:66 , PHE M:67 , VAL M:68 , LEU M:70 , GLY M:71 , PHE N:63 , PHE N:67 , LEU N:70 , HOH N:1680	BINDING SITE FOR RESIDUE BOG N 1624
24	CC6	SOFTWARE	PHE E:67 , GLY E:71 , LEU F:70 , LEU M:70 , GLY M:71 , THR M:72 , PRO M:74 , ALA M:75 , PHE N:67	BINDING SITE FOR RESIDUE BOG M 1625
25	CC7	SOFTWARE	VAL G:11 , VAL H:7 , GLU H:8 , LEU H:10 , VAL H:11 , HOH H:1643 , LEU P:10 , VAL P:11 , TYR P:14	BINDING SITE FOR RESIDUE BOG H 1626
26	CC8	SOFTWARE	TYR G:14 , PHE G:15 , VAL P:11 , PHE P:15 , VAL Q:7 , LEU Q:10 , VAL Q:11 , TYR Q:14 , HOH Q:1657 , HOH Q:1658	BINDING SITE FOR RESIDUE BOG Q 1627
27	CC9	SOFTWARE	THR G:19 , TYR G:21 , HOH G:1665 , BOG H:1629 , PHE P:15 , TYR Q:14 , PHE Q:15 , THR Q:17 , VAL Q:18 , THR Q:19 , HOH Q:1652 , HOH Q:1654 , HOH Q:1660	BINDING SITE FOR RESIDUE BOG Q 1628
28	DC1	SOFTWARE	VAL H:18 , TYR H:21 , GLY H:22 , LEU H:25 , TYR P:21 , GLY P:22 , LEU P:25 , TYR Q:21 , BOG Q:1628	BINDING SITE FOR RESIDUE BOG H 1629
29	DC2	SOFTWARE	ALA G:38 , PHE G:42 , GLU H:37 , SER H:40 , TYR H:41 , LYS H:44 , GLN H:48 , TYR P:41 , GLU Q:37 , ALA Q:38 , TYR Q:41 , SER Q:45	BINDING SITE FOR RESIDUE BOG Q 1630
30	DC3	SOFTWARE	GLN H:48 , LEU H:49 , LEU H:52 , HOH H:1632 , GLN P:48 , PRO P:51 , LEU P:52 , LYS P:55 , GLN Q:48 , LEU Q:52	BINDING SITE FOR RESIDUE BOG H 1631
31	DC4	SOFTWARE	GLU H:59 , LEU H:60 , PHE H:63 , LEU H:64 , ASN P:62 , PHE P:63 , TYR P:66	BINDING SITE FOR RESIDUE BOG P 1632
32	DC5	SOFTWARE	PHE G:63 , SER G:65 , TYR G:66 , GLU G:69 , HOH G:1668 , HOH G:1670 , HOH G:1675 , PHE H:63 , LEU Q:64 , PHE Q:67	BINDING SITE FOR RESIDUE BOG G 1633
33	DC6	SOFTWARE	TYR G:66 , GLU G:69 , LEU G:70 , HOH G:1676 , HOH G:1695 , HOH G:1698 , HOH G:1700 , PHE H:67 , LEU H:70 , PHE Q:67	BINDING SITE FOR RESIDUE BOG G 1634
34	DC7	SOFTWARE	TYR 1:14 , PHE 1:15 , VAL T:18 , TYR T:21 , GLY T:22 , HOH T:80	BINDING SITE FOR RESIDUE BOG T 1702
35	DC8	SOFTWARE	GLU 1:8 , VAL 2:7 , TYR S:14 , PHE X:15	BINDING SITE FOR RESIDUE BOG 2 1703
36	DC9	SOFTWARE	BOG 1:1705 , TYR 2:21 , LEU 2:25 , VAL S:29 , PRO S:32 , GLU S:33 , ALA S:36 , GLU S:37 , HOH S:1723 , LYS T:28	BINDING SITE FOR RESIDUE BOG S 1704
37	EC1	SOFTWARE	TYR 1:21 , GLY 1:22 , LEU 1:25 , LYS 1:28 , BOG S:1704 , VAL T:29 , GLU T:33	BINDING SITE FOR RESIDUE BOG 1 1705
38	EC2	SOFTWARE	SER 1:40 , TYR 1:41 , LYS 1:44 , HOH 1:1710 , ALA 2:38 , TYR S:41 , ALA T:38 , TYR T:41 , PHE T:42 , SER T:45	BINDING SITE FOR RESIDUE BOG T 1706
39	EC3	SOFTWARE	GLN 1:48 , GLN 2:48 , LEU 2:49 , LEU 2:52 , GLN T:48	BINDING SITE FOR RESIDUE BOG 1 1707
40	EC4	SOFTWARE	GLU 2:59 , LEU 2:60 , PHE 2:63 , HOH 2:1734 , ASN S:62 , PHE S:63	BINDING SITE FOR RESIDUE BOG 2 1708
41	EC5	SOFTWARE	ASN 1:62 , PHE 1:63 , TYR 1:66 , GLU 1:69 , PHE 2:63 , LEU T:60 , PHE T:63 , LEU T:64 , TYR T:66	BINDING SITE FOR RESIDUE BOG 1 1709
42	EC6	SOFTWARE	GLU 3:8 , VAL 3:11 , PHE 3:15 , LEU 4:10 , THR 4:17 , GLU U:8 , VAL U:11 , PHE U:15 , LEU V:10	BINDING SITE FOR RESIDUE BOG U 1710
43	EC7	SOFTWARE	GLY 3:22 , LEU 3:25 , MET 3:26 , VAL 3:29 , LYS 4:28 , LEU V:25 , MET V:26 , VAL V:29	BINDING SITE FOR RESIDUE BOG 3 1712
44	EC8	SOFTWARE	SER 4:45 , GLN 4:48 , LEU 4:49 , LEU 4:52 , LYS U:44 , GLU U:47 , GLN U:48	BINDING SITE FOR RESIDUE BOG 4 1714
45	EC9	SOFTWARE	LEU 3:60 , GLU 4:59 , LEU 4:60 , PHE 4:67 , THR U:58 , GLU U:59 , ASN U:62 , PHE U:63 , TYR U:66 , HOH U:1727 , HOH U:1729	BINDING SITE FOR RESIDUE BOG U 1715
46	FC1	SOFTWARE	TYR 3:66 , HOH V:734	BINDING SITE FOR RESIDUE BOG 3 1716
47	FC2	SOFTWARE	GLU 5:8 , GLU 6:8 , VAL 6:11 , HOH 6:1727 , PRO W:5 , HOH W:762	BINDING SITE FOR RESIDUE BOG 6 1717
48	FC3	SOFTWARE	VAL 6:11 , TYR W:14 , PHE W:15 , HOH W:405	BINDING SITE FOR RESIDUE BOG W 1718
49	FC4	SOFTWARE	TYR 5:21 , LEU 5:25 , HOH 5:724 , LEU 6:25 , THR W:19 , TYR X:21 , LEU X:25	BINDING SITE FOR RESIDUE BOG 5 1719
50	FC5	SOFTWARE	LYS 5:23 , ASP 5:24 , GLU 5:27 , LYS 5:28 , LYS 5:30 , HOH 5:291	BINDING SITE FOR RESIDUE BOG 5 1720
51	FC6	SOFTWARE	ILE 5:53 , LYS 5:54 , ALA 5:56 , GLY 5:57 , HOH 5:868 , PRO 6:51	BINDING SITE FOR RESIDUE BOG 5 1721
52	FC7	SOFTWARE	THR 6:50 , ILE 6:53 , LYS 6:54 , HOH 6:1728	BINDING SITE FOR RESIDUE BOG 6 1722
53	FC8	SOFTWARE	BOG 5:1724 , PHE 6:63 , LEU 6:64 , PHE 6:67 , ASN W:62 , PHE W:63 , TYR W:66 , HOH W:271	BINDING SITE FOR RESIDUE BOG W 1723
54	FC9	SOFTWARE	TYR 5:66 , PHE 5:67 , LEU 5:70 , PHE 6:67 , PHE W:63 , TYR W:66 , PHE W:67 , GLU W:69 , BOG W:1723 , BOG X:1725	BINDING SITE FOR RESIDUE BOG 5 1724
55	GC1	SOFTWARE	GLN 5:73 , BOG 5:1724 , PHE W:67 , LEU W:70 , LEU X:70 , GLY X:71 , HOH X:1733 , HOH X:1742	BINDING SITE FOR RESIDUE BOG X 1725
56	GC2	SOFTWARE	LEU 7:10 , VAL 7:11 , TYR 7:14 , GLU Y:8 , VAL Y:11 , GLU Z:4 , VAL Z:7 , LEU Z:10 , VAL Z:11	BINDING SITE FOR RESIDUE BOG 7 1726
57	GC3	SOFTWARE	VAL 7:11 , PHE 7:15 , VAL 8:7 , LEU 8:10 , VAL 8:11 , TYR 8:14 , HOH 8:1785 , TYR Y:14 , PHE Y:15 , HOH Y:1754	BINDING SITE FOR RESIDUE BOG 8 1727
58	GC4	SOFTWARE	TYR 8:14 , PHE 8:15 , THR 8:17 , VAL 8:18 , THR 8:19 , THR Y:19	BINDING SITE FOR RESIDUE BOG 8 1728
59	GC5	SOFTWARE	GLY 7:22 , LEU 7:25 , THR 8:17 , TYR 8:21 , VAL Z:18 , TYR Z:21 , GLY Z:22 , LEU Z:25	BINDING SITE FOR RESIDUE BOG Z 1729
60	GC6	SOFTWARE	ALA 8:38 , TYR 8:41 , GLN 8:48 , ALA Y:38 , PHE Y:42 , GLN Y:48 , GLU Z:37 , SER Z:40 , TYR Z:41 , GLN Z:48 , HOH Z:1738	BINDING SITE FOR RESIDUE BOG Y 1730
61	GC7	SOFTWARE	GLN 7:48 , PRO 7:51 , LEU 7:52 , GLN Y:48 , GLN Z:48 , LEU Z:49 , LEU Z:52 , HOH Z:1750	BINDING SITE FOR RESIDUE BOG Z 1731
62	GC8	SOFTWARE	ASN 7:62 , PHE 7:63 , TYR 7:66 , PHE 7:67 , LEU Z:60 , PHE Z:63 , LEU Z:64 , HOH Z:1754	BINDING SITE FOR RESIDUE BOG Z 1732
63	GC9	SOFTWARE	PHE 7:67 , PHE 8:63 , PHE 8:67 , ASN Y:62 , PHE Y:63 , TYR Y:66 , GLU Y:69 , HOH Y:1748 , HOH Y:1753	BINDING SITE FOR RESIDUE BOG Y 1733
64	HC1	SOFTWARE	TYR Y:66 , PHE Y:67 , GLU Y:69 , LEU Y:70 , TYR Z:66 , PHE Z:67	BINDING SITE FOR RESIDUE BOG Y 1734

SS Bonds (16, 16)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (2, 64)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain 1 from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6l1_  1: Apolipoprotein A-II                                            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......-..hhhhhhhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 1:4-39 (gaps)       -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: 1:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l 1   4 EPCVESL-SQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                  | 13        23        33        43        53        63        73    
                                 10 |                                                                 
                                   12

Chain 2 from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6 l2_ 2: Apolipoprotein A-II                                            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-.hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 2:4-39 (gaps)       -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: 2:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l 2   4 EPCV-SLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                               | |  13        23        33        43        53        63        73    
                               7 9

Chain 3 from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6l3_ 3: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhh........---.hhhhhhhhhhhhhhhhhhhhh..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 3:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 3:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l 3   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ---KSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31   |   |41        51        61        71      
                                                            35  39

Chain 4 from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6l4 _ 4: Apolipoprotein A-II                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-hhhhhhhhhhhhhhhhhhhhhh..-.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 4:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 4:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l 4   2 AKEPCV-SLVSQYFQTVTDYGKDLMEKVKSP-LQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                 | |11        21        31| |     41        51        61        71      
                                 7 9                     32 |                                           
                                                           34

Chain 5 from PDB  Type:PROTEIN  Length:75
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6l5_ 5: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.-..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 5:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 5:39-77 (gaps)          Transcript 1 (2)
                 1l6l 5   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELG-QPATQ  77
                                    11        21        31        41        51        61        71 |    
                                                                                                71 |    
                                                                                                  73

Chain 6 from PDB  Type:PROTEIN  Length:75
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6l6_ 6: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........-. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 6:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 6:39-77 (gaps)          Transcript 1 (2)
                 1l6l 6   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA-Q  77
                                    11        21        31        41        51        61        71   | |
                                                                                                    75 |
                                                                                                      77

Chain 7 from PDB  Type:PROTEIN  Length:70
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6l7_ 7: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.....---.hhhhhh-..hhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 7:2-39 (gaps)         ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 7:39-75 (gaps)        Transcript 1 (2)
                 1l6l 7   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ---KSYFEKS-EQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31   |   |41   | |  51        61        71    
                                                            35  39    45 |                            
                                                                        47

Chain 8 from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6l8_ 8: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: 8:2-39 UniProt: 18-62 ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: 8:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l 8   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31        41        51        61        71

Chain A from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6la_ A: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: A:4-39 [INCOMPLETE] -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: A:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l A   4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    13        23        33        43        53        63        73

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lb_ B: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: B:4-39 [INCOMPLETE] -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: B:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l B   4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    13        23        33        43        53        63        73

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lc_ C: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh........hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: C:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: C:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l C   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31        41        51        61        71

Chain D from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6ld_ D: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....--hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: D:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: D:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l D   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ--AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31   |  | 41        51        61        71      
                                                            35 38

Chain E from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6le_ E: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: E:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: E:39-77 (gaps)          Transcript 1 (2)
                 1l6l E   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ---KSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQ-ATQ  77
                                    11        21        31   |   |41        51        61        71 | |  
                                                            35  39                                73 |  
                                                                                                    75

Chain F from PDB  Type:PROTEIN  Length:75
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lf _ F: Apolipoprotein A-II                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: F:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: F:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l F   2 AKEPCV-SLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                 | |11        21        31        41        51        61        71      
                                 7 9

Chain G from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6lg_ G: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: G:2-39 UniProt: 18-62 ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: G:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l G   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31        41        51        61        71

Chain H from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6lh_ H: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: H:2-39 UniProt: 18-62 ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: H:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l H   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31        41        51        61        71

Chain I from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6li_  I: Apolipoprotein A-II                                            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......-..hhhhhhhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: I:4-39 (gaps)       -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: I:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l I   4 EPCVESL-SQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                  | 13        23        33        43        53        63        73    
                                 10 |                                                                 
                                   12

Chain J from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lj_ J: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: J:4-39 [INCOMPLETE] -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: J:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l J   4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    13        23        33        43        53        63        73

Chain K from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lk_ K: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhh.........--hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: K:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: K:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l K   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQA--KSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31    |  |41        51        61        71      
                                                             36 39

Chain L from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6ll_ L: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh-...-... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: L:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: L:39-77 (gaps)          Transcript 1 (2)
                 1l6l L   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVE-GTQ-ATQ  77
                                    11        21        31        41        51        61       |71 | |  
                                                                                              69 | | |  
                                                                                                71 | |  
                                                                                                  73 |  
                                                                                                    75

Chain M from PDB  Type:PROTEIN  Length:76
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lm_ M: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: M:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: M:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l M   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31        41        51        61        71

Chain N from PDB  Type:PROTEIN  Length:76
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6ln_ N: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: N:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: N:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l N   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31        41        51        61        71

Chain P from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6lp_ P: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh.......-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: P:2-39 (gaps)         ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: P:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l P   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAE-KSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31     | |41        51        61        71    
                                                              37 |                                    
                                                                39

Chain Q from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6lq_ Q: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhh.-hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: Q:2-39 UniProt: 18-62 ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: Q:39-75 (gaps)        Transcript 1 (2)
                 1l6l Q   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVN-LSYFVELGTQPA  75
                                    11        21        31        41        51        61| |     71    
                                                                                       62 |           
                                                                                         64

Chain S from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6ls_ S: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: S:4-39 [INCOMPLETE] -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: S:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l S   4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    13        23        33        43        53        63        73

Chain T from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    36        46        56        66        76        86        96    
          APOA2_HUMAN    27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lt_ T: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: T:4-39 [INCOMPLETE] -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: T:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l T   4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    13        23        33        43        53        63        73

Chain U from PDB  Type:PROTEIN  Length:76
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lu_ U: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: U:2-39 UniProt: 18-62 -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: U:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l U   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31        41        51        61        71

Chain V from PDB  Type:PROTEIN  Length:75
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lv_ V: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh......-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: V:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: V:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l V   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQA-AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                    11        21        31    | | 41        51        61        71      
                                                             36 |                                       
                                                               38

Chain W from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lw_ W: Apolipoprotein A-II                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh-.-hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......-... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: W:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: W:39-77 (gaps)          Transcript 1 (2)
                 1l6l W   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ-E-KSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQ-ATQ  77
                                    11        21        31   | | |41        51        61        71 | |  
                                                            35 | |                                73 |  
                                                              37 |                                  75  
                                                                39

Chain X from PDB  Type:PROTEIN  Length:75
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:76
                                    34        44        54        64        74        84        94      
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 100
               SCOP domains d1l6lx _ X: Apolipoprotein A-II                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: X:2-39 (gaps)         -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: X:39-77 UniProt: 62-100 Transcript 1 (2)
                 1l6l X   2 AKEPCV-SLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ  77
                                 | |11        21        31        41        51        61        71      
                                 7 9

Chain Y from PDB  Type:PROTEIN  Length:74
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    34        44        54        64        74        84        94    
          APOA2_HUMAN    25 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6ly_ Y: Apolipoprotein A-II                                             SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: Y:2-39 UniProt: 18-62 ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2f  PDB: Y:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l Y   2 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                    11        21        31        41        51        61        71

Chain Z from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    35        45        55        65        75        85        95   
          APOA2_HUMAN    26 KEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  98
               SCOP domains d1l6l z_ Z: Apolipoprotein A-II                                           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ApoA- II-1l6lZ01 Z:3-75                                                   Pfam domains (1)
           Pfam domains (2) ApoA- II-1l6lZ02 Z:3-75                                                   Pfam domains (2)
           Pfam domains (3) ApoA- II-1l6lZ03 Z:3-75                                                   Pfam domains (3)
           Pfam domains (4) ApoA- II-1l6lZ04 Z:3-75                                                   Pfam domains (4)
           Pfam domains (5) ApoA- II-1l6lZ05 Z:3-75                                                   Pfam domains (5)
           Pfam domains (6) ApoA- II-1l6lZ06 Z:3-75                                                   Pfam domains (6)
           Pfam domains (7) ApoA- II-1l6lZ07 Z:3-75                                                   Pfam domains (7)
           Pfam domains (8) ApoA- II-1l6lZ08 Z:3-75                                                   Pfam domains (8)
           Pfam domains (9) ApoA- II-1l6lZ09 Z:3-75                                                   Pfam domains (9)
          Pfam domains (10) ApoA- II-1l6lZ10 Z:3-75                                                   Pfam domains (10)
          Pfam domains (11) ApoA- II-1l6lZ11 Z:3-75                                                   Pfam domains (11)
          Pfam domains (12) ApoA- II-1l6lZ12 Z:3-75                                                   Pfam domains (12)
          Pfam domains (13) ApoA- II-1l6lZ13 Z:3-75                                                   Pfam domains (13)
          Pfam domains (14) ApoA- II-1l6lZ14 Z:3-75                                                   Pfam domains (14)
          Pfam domains (15) ApoA- II-1l6lZ15 Z:3-75                                                   Pfam domains (15)
          Pfam domains (16) ApoA- II-1l6lZ16 Z:3-75                                                   Pfam domains (16)
          Pfam domains (17) ApoA- II-1l6lZ17 Z:3-75                                                   Pfam domains (17)
          Pfam domains (18) ApoA- II-1l6lZ18 Z:3-75                                                   Pfam domains (18)
          Pfam domains (19) ApoA- II-1l6lZ19 Z:3-75                                                   Pfam domains (19)
          Pfam domains (20) ApoA- II-1l6lZ20 Z:3-75                                                   Pfam domains (20)
          Pfam domains (21) ApoA- II-1l6lZ21 Z:3-75                                                   Pfam domains (21)
          Pfam domains (22) ApoA- II-1l6lZ22 Z:3-75                                                   Pfam domains (22)
          Pfam domains (23) ApoA- II-1l6lZ23 Z:3-75                                                   Pfam domains (23)
          Pfam domains (24) ApoA- II-1l6lZ24 Z:3-75                                                   Pfam domains (24)
          Pfam domains (25) ApoA- II-1l6lZ25 Z:3-75                                                   Pfam domains (25)
          Pfam domains (26) ApoA- II-1l6lZ26 Z:3-75                                                   Pfam domains (26)
          Pfam domains (27) ApoA- II-1l6lZ27 Z:3-75                                                   Pfam domains (27)
          Pfam domains (28) ApoA- II-1l6lZ28 Z:3-75                                                   Pfam domains (28)
          Pfam domains (29) ApoA- II-1l6lZ29 Z:3-75                                                   Pfam domains (29)
          Pfam domains (30) ApoA- II-1l6lZ30 Z:3-75                                                   Pfam domains (30)
          Pfam domains (31) ApoA- II-1l6lZ31 Z:3-75                                                   Pfam domains (31)
          Pfam domains (32) ApoA- II-1l6lZ32 Z:3-75                                                   Pfam domains (32)
         Sec.struct. author .....-hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: Z:3-39 (gaps)        ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.2f  PDB: Z:39-75 [INCOMPLETE]  Transcript 1 (2)
                 1l6l Z   3 KEPCV-SLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPA  75
                                | | 12        22        32        42        52        62        72   
                                7 9

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 32)

CATH Domains (0, 0)

Pfam Domains (1, 32)

Gene Ontology (67, 67)

Asymmetric Unit(hide GO term definitions)

Chain 1,2,3,4,5,6,7,8,A,B,C,D,E,F,G,H,I,J,K,L,M,N,P,Q,S,T,U,V,W,X,Y,Z (APOA2_HUMAN | P02652)

molecular function
	GO:0034190	apolipoprotein receptor binding	Interacting selectively and non-covalently with an apolipoprotein receptor.
	GO:0015485	cholesterol binding	Interacting selectively and non-covalently with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0017127	cholesterol transporter activity	Enables the directed movement of cholesterol into, out of or within a cell, or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0008035	high-density lipoprotein particle binding	Interacting selectively and non-covalently with high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE.
	GO:0070653	high-density lipoprotein particle receptor binding	Interacting selectively and non-covalently with a high-density lipoprotein receptor.
	GO:0055102	lipase inhibitor activity	Stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0005319	lipid transporter activity	Enables the directed movement of lipids into, out of or within a cell, or between cells.
	GO:0031210	phosphatidylcholine binding	Interacting selectively and non-covalently with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline.
	GO:0060228	phosphatidylcholine-sterol O-acyltransferase activator activity	Increases the activity of phosphatidylcholine-sterol O-acyltransferase, an enzyme that converts cholesterol and phosphatidylcholine (lecithins) to cholesteryl esters and lyso-phosphatidylcholines.
	GO:0005543	phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0002526	acute inflammatory response	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.
	GO:0031100	animal organ regeneration	The regrowth of a lost or destroyed animal organ.
	GO:0033344	cholesterol efflux	The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.
	GO:0042632	cholesterol homeostasis	Any process involved in the maintenance of an internal steady state of cholesterol within an organism or cell.
	GO:0008203	cholesterol metabolic process	The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
	GO:0030301	cholesterol transport	The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0046340	diacylglycerol catabolic process	The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group.
	GO:0034380	high-density lipoprotein particle assembly	The non-covalent aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle.
	GO:0034384	high-density lipoprotein particle clearance	The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
	GO:0034375	high-density lipoprotein particle remodeling	The acquisition, loss or modification of a protein or lipid within a high-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
	GO:0006869	lipid transport	The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0042158	lipoprotein biosynthetic process	The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
	GO:0042157	lipoprotein metabolic process	The chemical reactions and pathways involving any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
	GO:0034374	low-density lipoprotein particle remodeling	The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
	GO:0060621	negative regulation of cholesterol import	Any process that decreases the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle.
	GO:0032375	negative regulation of cholesterol transport	Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0060695	negative regulation of cholesterol transporter activity	Any process that decreases the rate, frequency, or extent of cholesterol transporter activity.
	GO:0002740	negative regulation of cytokine secretion involved in immune response	Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion contributing to an immune response.
	GO:0060192	negative regulation of lipase activity	Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid.
	GO:0050995	negative regulation of lipid catabolic process	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
	GO:0010903	negative regulation of very-low-density lipoprotein particle remodeling	Any process that decreases the rate, frequency or extent of very-low-density lipoprotein particle remodeling. Very-low-density lipoprotein particle remodeling is the acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid.
	GO:0018206	peptidyl-methionine modification	The modification of peptidyl-methionine.
	GO:0006656	phosphatidylcholine biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
	GO:0009395	phospholipid catabolic process	The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
	GO:0033700	phospholipid efflux	The directed movement of a phospholipid out of a cell or organelle.
	GO:0043085	positive regulation of catalytic activity	Any process that activates or increases the activity of an enzyme.
	GO:0010873	positive regulation of cholesterol esterification	Any process that increases the frequency, rate or extent of cholesterol esterification. Cholesterol esterification is the lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and cholesterol. In the blood this process is associated with the conversion of free cholesterol into cholesteryl ester, which is then sequestered into the core of a lipoprotein particle.
	GO:0045416	positive regulation of interleukin-8 biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8.
	GO:0050996	positive regulation of lipid catabolic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
	GO:0018158	protein oxidation	The modification of a protein amino acid by oxidation.
	GO:0030300	regulation of intestinal cholesterol absorption	Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption.
	GO:0031647	regulation of protein stability	Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0043627	response to estrogen	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
	GO:0051384	response to glucocorticoid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
	GO:0009749	response to glucose	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
	GO:0001523	retinoid metabolic process	The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
	GO:0043691	reverse cholesterol transport	The directed movement of peripheral cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0006641	triglyceride metabolic process	The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.
	GO:0034370	triglyceride-rich lipoprotein particle remodeling	The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0042627	chylomicron	A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0034364	high-density lipoprotein particle	A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.
	GO:0034366	spherical high-density lipoprotein particle	A mature high-density lipoprotein (HDL) particle, converted from discoidal HDL particles following the esterification of cholesterol in the particle by phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT).
	GO:0034361	very-low-density lipoprotein particle	A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 64)

Sites (64, 64)

SS Bonds (16, 16)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (2, 64)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 32)

CATH Domains (0, 0)

Pfam Domains (1, 32)

Gene Ontology (67, 67)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File