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1L1O
Asym. Unit
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Asym.Unit (142 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN REPLICATION PROTEIN A (RPA) TRIMERIZATION CORE
Authors
:
E. V. Bochkareva, S. Korolev, S. P. Lees-Miller, A. Bochkarev
Date
:
19 Feb 02 (Deposition) - 05 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Eukaryotic Ssb, Ssdna Binding Protein, Ob-Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Bochkareva, S. Korolev, S. P. Lees-Miller, A. Bochkarev
Structure Of The Rpa Trimerization Core And Its Role In The Multistep Dna-Binding Mechanism Of Rpa.
Embo J. V. 21 1855 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:481 , THR C:483 , CYS C:486 , CYS C:500 , CYS C:503
BINDING SITE FOR RESIDUE ZN C 1
2
AC2
SOFTWARE
CYS F:481 , CYS F:486 , CYS F:500 , CYS F:503
BINDING SITE FOR RESIDUE ZN F 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(13, 26)
Info
All Exons
Exon 1.13 (C:439-458 | F:439-458)
Exon 1.14 (C:459-517 | F:459-517)
Exon 1.15 (C:518-553 | F:518-553)
Exon 1.16 (C:554-581 | F:554-579)
Exon 1.17 (C:587-616 | F:587-616)
Exon 2.2 (B:44-73 | E:44-73)
Exon 2.3 (B:74-111 | E:74-111)
Exon 2.4 (B:117-136 | E:117-136)
Exon 2.5a (B:137-171 | E:137-171)
Exon 3.5f (A:3-33 | D:3-33)
Exon 3.7a (A:34-58 | D:34-58)
Exon 3.8b (A:59-95 | D:59-95)
Exon 3.9c (A:95-117 | D:95-117)
View:
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All Exon Boundaries
01: Boundary 1.12/1.13
02: Boundary 1.13/1.14
03: Boundary 1.14/1.15
04: Boundary 1.15/1.16
05: Boundary 1.16/1.17
06: Boundary 1.17/-
07: Boundary 2.1e/2.2
08: Boundary 2.2/2.3
09: Boundary 2.3/2.4
10: Boundary 2.4/2.5a
11: Boundary 2.5a/2.6
12: Boundary 3.5b/3.5f
13: Boundary 3.5f/3.7a
14: Boundary 3.7a/3.8b
15: Boundary 3.8b/3.9c
16: Boundary 3.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000254719
1
ENSE00001236253
chr17:
1733266-1733420
155
RFA1_HUMAN
1-11
11
0
-
-
1.2
ENST00000254719
2
ENSE00001236273
chr17:
1746097-1746147
51
RFA1_HUMAN
12-28
17
0
-
-
1.3
ENST00000254719
3
ENSE00001236246
chr17:
1747214-1747292
79
RFA1_HUMAN
29-55
27
0
-
-
1.4
ENST00000254719
4
ENSE00001236240
chr17:
1747872-1747980
109
RFA1_HUMAN
55-91
37
0
-
-
1.5
ENST00000254719
5
ENSE00001236237
chr17:
1756395-1756483
89
RFA1_HUMAN
91-121
31
0
-
-
1.6
ENST00000254719
6
ENSE00001198002
chr17:
1775728-1775820
93
RFA1_HUMAN
121-152
32
0
-
-
1.7
ENST00000254719
7
ENSE00001197997
chr17:
1778955-1779087
133
RFA1_HUMAN
152-196
45
0
-
-
1.8
ENST00000254719
8
ENSE00000904194
chr17:
1780506-1780608
103
RFA1_HUMAN
196-230
35
0
-
-
1.9
ENST00000254719
9
ENSE00000904193
chr17:
1782287-1782355
69
RFA1_HUMAN
231-253
23
0
-
-
1.10
ENST00000254719
10
ENSE00000904192
chr17:
1782509-1782701
193
RFA1_HUMAN
254-318
65
0
-
-
1.11
ENST00000254719
11
ENSE00001310575
chr17:
1782854-1782993
140
RFA1_HUMAN
318-364
47
0
-
-
1.12
ENST00000254719
12
ENSE00001197976
chr17:
1783837-1783985
149
RFA1_HUMAN
365-414
50
0
-
-
1.13
ENST00000254719
13
ENSE00001132340
chr17:
1787106-1787238
133
RFA1_HUMAN
414-458
45
2
C:439-458
F:439-458
20
20
1.14
ENST00000254719
14
ENSE00001116065
chr17:
1791969-1792145
177
RFA1_HUMAN
459-517
59
2
C:459-517
F:459-517
59
59
1.15
ENST00000254719
15
ENSE00001116060
chr17:
1795127-1795234
108
RFA1_HUMAN
518-553
36
2
C:518-553
F:518-553
36
36
1.16
ENST00000254719
16
ENSE00001116063
chr17:
1798303-1798389
87
RFA1_HUMAN
554-582
29
2
C:554-581
F:554-579
28
26
1.17
ENST00000254719
17
ENSE00001236266
chr17:
1800365-1802848
2484
RFA1_HUMAN
583-616
34
2
C:587-616
F:587-616
30
30
2.1b
ENST00000373912
1b
ENSE00001461906
chr1:
28241254-28240945
310
RFA2_HUMAN
1-4
4
0
-
-
2.1e
ENST00000373912
1e
ENSE00001065438
chr1:
28240680-28240574
107
RFA2_HUMAN
4-39
36
0
-
-
2.2
ENST00000373912
2
ENSE00000956216
chr1:
28233793-28233692
102
RFA2_HUMAN
40-73
34
2
B:44-73
E:44-73
30
30
2.3
ENST00000373912
3
ENSE00000956217
chr1:
28233552-28233439
114
RFA2_HUMAN
74-111
38
2
B:74-111
E:74-111
38
38
2.4
ENST00000373912
4
ENSE00000761795
chr1:
28224218-28224144
75
RFA2_HUMAN
112-136
25
2
B:117-136
E:117-136
20
20
2.5a
ENST00000373912
5a
ENSE00002168322
chr1:
28223632-28223516
117
RFA2_HUMAN
137-175
39
2
B:137-171
E:137-171
35
35
2.6
ENST00000373912
6
ENSE00000761799
chr1:
28220908-28220801
108
RFA2_HUMAN
176-211
36
0
-
-
2.7
ENST00000373912
7
ENSE00000761801
chr1:
28220617-28220523
95
RFA2_HUMAN
212-243
32
0
-
-
2.8d
ENST00000373912
8d
ENSE00001461899
chr1:
28218758-28218035
724
RFA2_HUMAN
243-270
28
0
-
-
3.5b
ENST00000396682
5b
ENSE00001554412
chr7:
7680603-7680354
250
RFA3_HUMAN
-
0
0
-
-
3.5f
ENST00000396682
5f
ENSE00001553901
chr7:
7680212-7679951
262
RFA3_HUMAN
1-33
33
2
A:3-33
D:3-33
31
31
3.7a
ENST00000396682
7a
ENSE00001798953
chr7:
7678775-7678701
75
RFA3_HUMAN
34-58
25
2
A:34-58
D:34-58
25
25
3.8b
ENST00000396682
8b
ENSE00000671279
chr7:
7677603-7677495
109
RFA3_HUMAN
59-95
37
2
A:59-95
D:59-95
37
37
3.9c
ENST00000396682
9c
ENSE00001525919
chr7:
7676713-7676563
151
RFA3_HUMAN
95-121
27
2
A:95-117
D:95-117
23
23
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1l1oa_ (A:)
1b: SCOP_d1l1od_ (D:)
2a: SCOP_d1l1ob_ (B:)
2b: SCOP_d1l1oe_ (E:)
3a: SCOP_d1l1oc_ (C:)
3b: SCOP_d1l1of_ (F:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Single strand DNA-binding domain, SSB
(96)
Protein domain
:
Replication protein A 14 KDa (RPA14) subunit
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1l1oa_
A:
1b
d1l1od_
D:
Protein domain
:
Replication protein A 32 KDa subunit (RPA32) fragment
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1l1ob_
B:
2b
d1l1oe_
E:
Protein domain
:
Replication protein A 70 KDa subunit (RPA70)
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d1l1oc_
C:
3b
d1l1of_
F:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1l1oA00 (A:3-117)
1b: CATH_1l1oD00 (D:3-117)
1c: CATH_1l1oB00 (B:44-171)
1d: CATH_1l1oE00 (E:44-171)
1e: CATH_1l1oF01 (F:439-475,F:515-615)
1f: CATH_1l1oC01 (C:439-475,C:515-615)
2a: CATH_1l1oC02 (C:477-514)
2b: CATH_1l1oF02 (F:477-514)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
1l1oA00
A:3-117
1b
1l1oD00
D:3-117
1c
1l1oB00
B:44-171
1d
1l1oE00
E:44-171
1e
1l1oF01
F:439-475,F:515-615
1f
1l1oC01
C:439-475,C:515-615
Architecture
:
Single Sheet
(341)
Topology
:
N-terminal domain of TfIIb
(166)
Homologous Superfamily
:
[code=2.20.25.10, no name defined]
(79)
Human (Homo sapiens)
(5)
2a
1l1oC02
C:477-514
2b
1l1oF02
F:477-514
[
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_RPA_C_1l1oE01 (E:166-171)
1b: PFAM_RPA_C_1l1oE02 (E:166-171)
2a: PFAM_Rep_fac_A_3_1l1oD01 (D:5-113)
2b: PFAM_Rep_fac_A_3_1l1oD02 (D:5-113)
3a: PFAM_tRNA_anti_1l1oE03 (E:74-149)
3b: PFAM_tRNA_anti_1l1oE04 (E:74-149)
4a: PFAM_Rep_fac_A_C_1l1oF01 (F:461-606)
4b: PFAM_Rep_fac_A_C_1l1oF02 (F:461-606)
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(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
RPA_C
(7)
Homo sapiens (Human)
(7)
1a
RPA_C-1l1oE01
E:166-171
1b
RPA_C-1l1oE02
E:166-171
Clan
:
OB
(224)
Family
:
Rep_fac-A_3
(6)
Homo sapiens (Human)
(6)
2a
Rep_fac-A_3-1l1oD01
D:5-113
2b
Rep_fac-A_3-1l1oD02
D:5-113
Family
:
tRNA_anti
(18)
Homo sapiens (Human)
(7)
3a
tRNA_anti-1l1oE03
E:74-149
3b
tRNA_anti-1l1oE04
E:74-149
Clan
:
no clan defined [family: Rep_fac-A_C]
(1)
Family
:
Rep_fac-A_C
(1)
Homo sapiens (Human)
(1)
4a
Rep_fac-A_C-1l1oF01
F:461-606
4b
Rep_fac-A_C-1l1oF02
F:461-606
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