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1L0Q
Biol. Unit 4
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Asym.Unit (264 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (70 KB)
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(1)
Title
:
TANDEM YVTN BETA-PROPELLER AND PKD DOMAINS FROM AN ARCHAEAL SURFACE LAYER PROTEIN
Authors
:
H. Jing, J. Takagi, J. -H. Liu, S. Lindgren, R. -G. Zhang, A. Joachimiak, H. Wang, T. A. Springer
Date
:
12 Feb 02 (Deposition) - 06 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Surface Layer Protein, Slp, S-Layer, 7-Bladed Beta-Propeller, Pkd Superfamily, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Jing, J. Takagi, J. Liu, S. Lindgren, R. Zhang, A. Joachimiak, J. Wang, T. Springer
Archaeal Surface Layer Proteins Contain Beta Propeller, Pkd And Beta Helix Domains And Are Related To Metazoan Cell Surface Proteins.
Structure V. 10 1453 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
2a: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMa)
2b: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMb)
2c: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMc)
2d: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
2
YCM
1
Mod. Amino Acid
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1l0qa2 (A:1-301)
1b: SCOP_d1l0qb2 (B:1-301)
1c: SCOP_d1l0qc2 (C:1-301)
1d: SCOP_d1l0qd2 (D:1-301)
2a: SCOP_d1l0qa1 (A:302-391)
2b: SCOP_d1l0qb1 (B:302-391)
2c: SCOP_d1l0qc1 (C:302-391)
2d: SCOP_d1l0qd1 (D:302-391)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(31)
Family
:
YVTN repeat
(1)
Protein domain
:
Surface layer protein
(1)
Methanosarcina mazei [TaxId: 2209]
(1)
1a
d1l0qa2
A:1-301
1b
d1l0qb2
B:1-301
1c
d1l0qc2
C:1-301
1d
d1l0qd2
D:1-301
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PKD domain
(3)
Family
:
PKD domain
(3)
Protein domain
:
Surface layer protein
(1)
Methanosarcina mazei [TaxId: 2209]
(1)
2a
d1l0qa1
A:302-391
2b
d1l0qb1
B:302-391
2c
d1l0qc1
C:302-391
2d
d1l0qd1
D:302-391
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1l0qA01 (A:1-301)
1b: CATH_1l0qB01 (B:1-301)
1c: CATH_1l0qC01 (C:1-301)
1d: CATH_1l0qD01 (D:1-301)
2a: CATH_1l0qA02 (A:302-391)
2b: CATH_1l0qB02 (B:302-391)
2c: CATH_1l0qC02 (C:302-391)
2d: CATH_1l0qD02 (D:302-391)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Methanosarcina mazei s-6. Organism_taxid: 213585. Strain: s-6.
(1)
1a
1l0qA01
A:1-301
1b
1l0qB01
B:1-301
1c
1l0qC01
C:1-301
1d
1l0qD01
D:1-301
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.670, no name defined]
(2)
Methanosarcina mazei s-6. Organism_taxid: 213585. Strain: s-6.
(1)
2a
1l0qA02
A:302-391
2b
1l0qB02
B:302-391
2c
1l0qC02
C:302-391
2d
1l0qD02
D:302-391
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Lactonase_1l0qD01 (D:100-240)
1b: PFAM_Lactonase_1l0qD02 (D:100-240)
1c: PFAM_Lactonase_1l0qD03 (D:100-240)
1d: PFAM_Lactonase_1l0qD04 (D:100-240)
1e: PFAM_Lactonase_1l0qD05 (D:100-240)
1f: PFAM_Lactonase_1l0qD06 (D:100-240)
1g: PFAM_Lactonase_1l0qD07 (D:100-240)
1h: PFAM_Lactonase_1l0qD08 (D:100-240)
2a: PFAM_PKD_1l0qD09 (D:309-376)
2b: PFAM_PKD_1l0qD10 (D:309-376)
2c: PFAM_PKD_1l0qD11 (D:309-376)
2d: PFAM_PKD_1l0qD12 (D:309-376)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
Lactonase
(3)
Methanosarcina mazei (Methanosarcina frisia)
(1)
1a
Lactonase-1l0qD01
D:100-240
1b
Lactonase-1l0qD02
D:100-240
1c
Lactonase-1l0qD03
D:100-240
1d
Lactonase-1l0qD04
D:100-240
1e
Lactonase-1l0qD05
D:100-240
1f
Lactonase-1l0qD06
D:100-240
1g
Lactonase-1l0qD07
D:100-240
1h
Lactonase-1l0qD08
D:100-240
Clan
:
E-set
(290)
Family
:
PKD
(2)
Methanosarcina mazei (Methanosarcina frisia)
(1)
2a
PKD-1l0qD09
D:309-376
2b
PKD-1l0qD10
D:309-376
2c
PKD-1l0qD11
D:309-376
2d
PKD-1l0qD12
D:309-376
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Chain D
Asymmetric Unit 1
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Asym.Unit (264 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
Biol.Unit 4 (70 KB)
Header - Biol.Unit 4
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