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1KD7
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN EXTRACELLULAR DOMAIN FRAGMENT OF HUMAN BAFF
Authors
:
M. Karpusas, T. G. Cachero, F. Qian, A. Boriack-Sjodin, C. Mullen, K. St M. Hsu, S. L. Kalled
Date
:
12 Nov 01 (Deposition) - 12 Nov 02 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,K,L,M
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: K,L,M (1x)
Keywords
:
Beta-Sheet Shandwich, Tnf, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Karpusas, T. G. Cachero, F. Qian, A. Boriack-Sjodin, C. Mullen, K. Strauch, Y. -M. Hsu, S. L. Kalled
Crystal Structure Of Extracellular Human Baff, A Tnf Family Member That Stimulates B Lymphocytes
J. Mol. Biol. V. 315 1145 2002
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:148-284,B:148-284,C:148-284,K:14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TN13B_HUMAN
148-284
6
A:148-284
B:148-284
C:148-284
K:148-284
L:148-284
M:148-284
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Exons
(5, 30)
Info
All Exons
Exon 1.2e (A:142-142 | B:142-142 | C:142-142 ...)
Exon 1.3 (A:142-161 | B:142-161 | C:142-161 ...)
Exon 1.5a (A:161-198 | B:161-198 | C:161-198 ...)
Exon 1.5c (A:199-249 | B:199-249 | C:199-249 ...)
Exon 1.6c (A:249-285 | B:249-285 | C:249-285 ...)
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All Exon Boundaries
1: Boundary 1.2b/1.2e
2: Boundary 1.2e/1.3
3: Boundary 1.3/1.5a
4: Boundary 1.5a/1.5c
5: Boundary 1.5c/1.6c
6: Boundary 1.6c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000375887
2b
ENSE00001811977
chr13:
108922066-108922582
517
TN13B_HUMAN
1-113
113
0
-
-
1.2e
ENST00000375887
2e
ENSE00000686291
chr13:
108922688-108922772
85
TN13B_HUMAN
114-142
29
6
A:142-142
B:142-142
C:142-142
K:142-142
L:142-142
M:142-142
1
1
1
1
1
1
1.3
ENST00000375887
3
ENSE00000854068
chr13:
108939151-108939207
57
TN13B_HUMAN
142-161
20
6
A:142-161
B:142-161
C:142-161
K:142-161
L:142-161
M:142-161
20
20
20
20
20
20
1.5a
ENST00000375887
5a
ENSE00000854071
chr13:
108955601-108955713
113
TN13B_HUMAN
161-198
38
6
A:161-198
B:161-198
C:161-198
K:161-198
L:161-198
M:161-198
38
38
38
38
38
38
1.5c
ENST00000375887
5c
ENSE00000854073
chr13:
108955802-108955952
151
TN13B_HUMAN
199-249
51
6
A:199-249
B:199-249
C:199-249
K:199-249
L:199-249
M:199-249
51
51
51
51
51
51
1.6c
ENST00000375887
6c
ENSE00001925016
chr13:
108959174-108959385
212
TN13B_HUMAN
249-285
37
6
A:249-285
B:249-285
C:249-285
K:249-285
L:249-285
M:249-285
37
37
37
37
37
37
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1kd7a_ (A:)
1b: SCOP_d1kd7b_ (B:)
1c: SCOP_d1kd7c_ (C:)
1d: SCOP_d1kd7k_ (K:)
1e: SCOP_d1kd7l_ (L:)
1f: SCOP_d1kd7m_ (M:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Soluble part of TALL-1, sTALL-1 (BAFF)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1kd7a_
A:
1b
d1kd7b_
B:
1c
d1kd7c_
C:
1d
d1kd7k_
K:
1e
d1kd7l_
L:
1f
d1kd7m_
M:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1kd7A00 (A:142-285)
1b: CATH_1kd7B00 (B:142-285)
1c: CATH_1kd7C00 (C:142-285)
1d: CATH_1kd7K00 (K:142-285)
1e: CATH_1kd7L00 (L:142-285)
1f: CATH_1kd7M00 (M:142-285)
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Homologous Superfamilies
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)
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)
Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
1kd7A00
A:142-285
1b
1kd7B00
B:142-285
1c
1kd7C00
C:142-285
1d
1kd7K00
K:142-285
1e
1kd7L00
L:142-285
1f
1kd7M00
M:142-285
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_TNF_1kd7M01 (M:168-284)
1b: PFAM_TNF_1kd7M02 (M:168-284)
1c: PFAM_TNF_1kd7M03 (M:168-284)
1d: PFAM_TNF_1kd7M04 (M:168-284)
1e: PFAM_TNF_1kd7M05 (M:168-284)
1f: PFAM_TNF_1kd7M06 (M:168-284)
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Clans
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Organisms
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Clan
:
C1q_TNF
(45)
Family
:
TNF
(37)
Homo sapiens (Human)
(26)
1a
TNF-1kd7M01
M:168-284
1b
TNF-1kd7M02
M:168-284
1c
TNF-1kd7M03
M:168-284
1d
TNF-1kd7M04
M:168-284
1e
TNF-1kd7M05
M:168-284
1f
TNF-1kd7M06
M:168-284
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Asym.Unit (137 KB)
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