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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1KCW
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF HUMAN CERULOPLASMIN AT 3.0 ANGSTROMS
Authors
:
G. L. Card, V. N. Zaitsev, P. F. Lindley
Date
:
25 Sep 96 (Deposition) - 12 Feb 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Ceruloplasmin, Multi-Copper Oxidase, Plasma Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Zaitseva, V. Zaitsev, G. Card, K. Moshkov, B. Bax, A. Ralph, P. Lindley
The X-Ray Structure Of Human Serum Ceruloplasmin At 3. 1 Angstrom: Nature Of The Copper Centres.
J. Biol. Inorg. Chem. V. 1 15 1996
[
close entry info
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: OXYGEN ATOM (Oa)
3b: OXYGEN ATOM (Ob)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
8
Ligand/Ion
COPPER (II) ION
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
O
2
Ligand/Ion
OXYGEN ATOM
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: CU1 (UNKNOWN)
14: CU2 (UNKNOWN)
15: CU3 (UNKNOWN)
16: CU4 (UNKNOWN)
17: CU5 (UNKNOWN)
18: TRI (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:119 , ILE A:1016
BINDING SITE FOR RESIDUE NAG A 1047
02
AC2
SOFTWARE
ASN A:743
BINDING SITE FOR RESIDUE NAG A 1048
03
AC3
SOFTWARE
HIS A:276 , CYS A:319 , HIS A:324
BINDING SITE FOR RESIDUE CU A 1049
04
AC4
SOFTWARE
HIS A:163 , HIS A:980 , HIS A:1020 , CU A:1051 , O A:1057
BINDING SITE FOR RESIDUE CU A 1050
05
AC5
SOFTWARE
HIS A:103 , HIS A:161 , HIS A:1022 , CU A:1050 , CU A:1052 , O A:1057
BINDING SITE FOR RESIDUE CU A 1051
06
AC6
SOFTWARE
HIS A:101 , HIS A:103 , HIS A:978 , HIS A:980 , CU A:1051 , O A:1057 , O A:1058
BINDING SITE FOR RESIDUE CU A 1052
07
AC7
SOFTWARE
HIS A:637 , CYS A:680 , HIS A:685 , MET A:690
BINDING SITE FOR RESIDUE CU A 1053
08
AC8
SOFTWARE
HIS A:602 , ASP A:684
BINDING SITE FOR RESIDUE CU A 1054
09
AC9
SOFTWARE
LEU A:974 , HIS A:975 , CYS A:1021 , HIS A:1026 , MET A:1031
BINDING SITE FOR RESIDUE CU A 1055
10
BC1
SOFTWARE
GLU A:935 , HIS A:940 , ASP A:1025
BINDING SITE FOR RESIDUE CU A 1056
11
BC2
SOFTWARE
HIS A:103 , HIS A:161 , HIS A:163 , HIS A:978 , HIS A:980 , HIS A:1020 , HIS A:1022 , CU A:1050 , CU A:1051 , CU A:1052
BINDING SITE FOR RESIDUE O A 1057
12
BC3
SOFTWARE
HIS A:101 , SER A:102 , HIS A:103 , TYR A:107 , HIS A:978 , HIS A:980 , CU A:1052
BINDING SITE FOR RESIDUE O A 1058
13
CU1
UNKNOWN
CU A:1049 , HIS A:276 , CYS A:319 , HIS A:324 , LEU A:329
TYPE I CU BINDING SITE IN DOMAIN 2. AT BEST LEU 329 MAY HAVE VAN DER WAALS CONTACT WITH THE CU.
14
CU2
UNKNOWN
CU A:1053 , HIS A:637 , CYS A:680 , HIS A:685 , MET A:690
TYPE I CU BINDING SITE IN DOMAIN 4.
15
CU3
UNKNOWN
CU A:1054 , GLU A:597 , HIS A:602 , ASP A:684 , GLU A:971
LABILE CU BINDING SITE IN DOMAIN 4.
16
CU4
UNKNOWN
CU A:1055 , HIS A:975 , CYS A:1021 , HIS A:1026 , MET A:1031
TYPE I CU BINDING SITE IN DOMAIN 6.
17
CU5
UNKNOWN
CU A:1056 , GLU A:272 , GLU A:935 , HIS A:940 , ASP A:1025
LABILE CU BINDING SITE IN DOMAIN 6.
18
TRI
UNKNOWN
CU A:1050 , CU A:1051 , O A:1057 , CU A:1052 , O A:1058 , HIS A:101 , HIS A:103 , HIS A:161 , HIS A:163 , HIS A:978 , HIS A:980 , HIS A:1020 , HIS A:1022
TRINUCLEAR CENTER. CU31 AND 32 ARE THE PAIR OF TYPE III CU AND CU34 IS THE TYPE II CU. O33 BRIDGES CU 31 - 32 AND O35 BRIDGES Y 107 - CU 34.
[
close Site info
]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025655 (I44T, chain A, )
2: VAR_032815 (R348C, chain A, )
3: VAR_025656 (P458L, chain A, )
4: VAR_025657 (D525E, chain A, )
5: VAR_025658 (T532I, chain A, )
6: VAR_025659 (R774H, chain A, )
7: VAR_025660 (T822R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025655
I
63
T
CERU_HUMAN
Unclassified
---
A
I
44
T
2
UniProt
VAR_032815
R
367
C
CERU_HUMAN
Polymorphism
34624984
A
R
348
C
3
UniProt
VAR_025656
P
477
L
CERU_HUMAN
Polymorphism
35331711
A
P
458
L
4
UniProt
VAR_025657
D
544
E
CERU_HUMAN
Polymorphism
701753
A
D
525
E
5
UniProt
VAR_025658
T
551
I
CERU_HUMAN
Polymorphism
---
A
T
532
I
6
UniProt
VAR_025659
R
793
H
CERU_HUMAN
Polymorphism
---
A
R
774
H
7
UniProt
VAR_025660
T
841
R
CERU_HUMAN
Polymorphism
56033670
A
T
822
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:313-333|A:674-694|A:1015-1035)
2: MULTICOPPER_OXIDASE2 (A:1020-1031)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
CERU_HUMAN
332-352
693-713
1034-1054
3
A:313-333
A:674-694
A:1015-1035
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
CERU_HUMAN
1039-1050
1
A:1020-1031
[
close PROSITE info
]
Exons
(18, 18)
Info
All Exons
Exon 1.1a (A:1-30)
Exon 1.3 (A:30-113)
Exon 1.4b (A:113-184)
Exon 1.5a (A:184-242)
Exon 1.6b (A:242-327)
Exon 1.7 (A:327-384 (gaps))
Exon 1.8 (A:384-431)
Exon 1.9b (A:431-474)
Exon 1.10a (A:483-552)
Exon 1.11b (A:553-603)
Exon 1.12a (A:603-674)
Exon 1.13a (A:674-743)
Exon 1.14 (A:743-790)
Exon 1.15 (A:790-833)
Exon 1.16c (A:833-868)
Exon 1.17 (A:869-941 (gaps))
Exon 1.18a (A:941-987)
Exon 1.19c (A:988-1040)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.6b
06: Boundary 1.6b/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9b
09: Boundary 1.9b/1.10a
10: Boundary 1.10a/1.11b
11: Boundary 1.11b/1.12a
12: Boundary 1.12a/1.13a
13: Boundary 1.13a/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16c
16: Boundary 1.16c/1.17
17: Boundary 1.17/1.18a
18: Boundary 1.18a/1.19c
19: Boundary 1.19c/1.20c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264613
1a
ENSE00001008197
chr3:
148939842-148939434
409
CERU_HUMAN
1-49
49
1
A:1-30
30
1.3
ENST00000264613
3
ENSE00001893178
chr3:
148930485-148930238
248
CERU_HUMAN
49-132
84
1
A:30-113
84
1.4b
ENST00000264613
4b
ENSE00001245608
chr3:
148928166-148927954
213
CERU_HUMAN
132-203
72
1
A:113-184
72
1.5a
ENST00000264613
5a
ENSE00001245605
chr3:
148927171-148926998
174
CERU_HUMAN
203-261
59
1
A:184-242
59
1.6b
ENST00000264613
6b
ENSE00001008187
chr3:
148925404-148925150
255
CERU_HUMAN
261-346
86
1
A:242-327
86
1.7
ENST00000264613
7
ENSE00001008205
chr3:
148924126-148923955
172
CERU_HUMAN
346-403
58
1
A:327-384 (gaps)
58
1.8
ENST00000264613
8
ENSE00001008195
chr3:
148920028-148919889
140
CERU_HUMAN
403-450
48
1
A:384-431
48
1.9b
ENST00000264613
9b
ENSE00001008184
chr3:
148917651-148917499
153
CERU_HUMAN
450-501
52
1
A:431-474
44
1.10a
ENST00000264613
10a
ENSE00001008182
chr3:
148916365-148916154
212
CERU_HUMAN
501-571
71
1
A:483-552
70
1.11b
ENST00000264613
11b
ENSE00001008188
chr3:
148905989-148905839
151
CERU_HUMAN
572-622
51
1
A:553-603
51
1.12a
ENST00000264613
12a
ENSE00001008204
chr3:
148904519-148904307
213
CERU_HUMAN
622-693
72
1
A:603-674
72
1.13a
ENST00000264613
13a
ENSE00001008200
chr3:
148903233-148903026
208
CERU_HUMAN
693-762
70
1
A:674-743
70
1.14
ENST00000264613
14
ENSE00001008190
chr3:
148901392-148901253
140
CERU_HUMAN
762-809
48
1
A:743-790
48
1.15
ENST00000264613
15
ENSE00001008201
chr3:
148899920-148899792
129
CERU_HUMAN
809-852
44
1
A:790-833
44
1.16c
ENST00000264613
16c
ENSE00000779559
chr3:
148897449-148897343
107
CERU_HUMAN
852-887
36
1
A:833-868
36
1.17
ENST00000264613
17
ENSE00001245534
chr3:
148896418-148896202
217
CERU_HUMAN
888-960
73
1
A:869-941 (gaps)
73
1.18a
ENST00000264613
18a
ENSE00001245525
chr3:
148895766-148895627
140
CERU_HUMAN
960-1006
47
1
A:941-987
47
1.19c
ENST00000264613
19c
ENSE00001245656
chr3:
148894199-148894037
163
CERU_HUMAN
1007-1061
55
1
A:988-1040
53
1.20c
ENST00000264613
20c
ENSE00001915536
chr3:
148891517-148890286
1232
CERU_HUMAN
1061-1065
5
0
-
-
[
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]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1kcwa1 (A:1-192)
1b: SCOP_d1kcwa2 (A:193-338)
1c: SCOP_d1kcwa3 (A:347-553)
1d: SCOP_d1kcwa4 (A:554-705)
1e: SCOP_d1kcwa5 (A:706-884)
1f: SCOP_d1kcwa6 (A:892-1040)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Ceruloplasmin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1kcwa1
A:1-192
1b
d1kcwa2
A:193-338
1c
d1kcwa3
A:347-553
1d
d1kcwa4
A:554-705
1e
d1kcwa5
A:706-884
1f
d1kcwa6
A:892-1040
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1kcwA02 (A:193-338)
1b: CATH_1kcwA06 (A:892-1040)
1c: CATH_1kcwA04 (A:554-705)
1d: CATH_1kcwA05 (A:706-884)
1e: CATH_1kcwA01 (A:1-192)
1f: CATH_1kcwA03 (A:347-553)
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Organisms
(
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Human (Homo sapiens)
(5)
1a
1kcwA02
A:193-338
1b
1kcwA06
A:892-1040
1c
1kcwA04
A:554-705
1d
1kcwA05
A:706-884
1e
1kcwA01
A:1-192
1f
1kcwA03
A:347-553
[
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_1kcwA01 (A:202-338)
2a: PFAM_Cu_oxidase_2_1kcwA02 (A:913-1040)
3a: PFAM_Cu_oxidase_3_1kcwA03 (A:772-884)
3b: PFAM_Cu_oxidase_3_1kcwA04 (A:772-884)
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Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Homo sapiens (Human)
(2)
1a
Cu-oxidase-1kcwA01
A:202-338
Family
:
Cu-oxidase_2
(24)
Homo sapiens (Human)
(2)
2a
Cu-oxidase_2-1kcwA02
A:913-1040
Family
:
Cu-oxidase_3
(79)
Homo sapiens (Human)
(2)
3a
Cu-oxidase_3-1kcwA03
A:772-884
3b
Cu-oxidase_3-1kcwA04
A:772-884
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Asymmetric Unit 1
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