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1K62
Biol. Unit 1
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Asym.Unit (154 KB)
Biol.Unit 1 (297 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN ARGININOSUCCINATE LYASE Q286R MUTANT
Authors
:
L. M. Sampaleanu, F. Vallee, G. D. Thompson, P. L. Howell
Date
:
14 Oct 01 (Deposition) - 01 Feb 02 (Release) - 13 May 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Intragenic Complementation, Arginiosuccinate Lyase, Delta Crystallin, Enzyme Mechanism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Sampaleanu, F. Vallee, G. D. Thompson, P. L. Howell
Three-Dimensional Structure Of The Argininosuccinate Lyase Frequently Complementing Allele Q286R.
Biochemistry V. 40 15570 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(59, 236)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_043106 (D31N, chain A/B, )
02: VAR_072186 (V70A, chain A/B, )
03: VAR_072187 (R94C, chain A/B, )
04: VAR_072188 (R94H, chain A/B, )
05: VAR_000676 (R95C, chain A/B, )
06: VAR_072189 (R95H, chain A/B, )
07: VAR_072190 (A104V, chain A/B, )
08: VAR_000677 (R111W, chain A/B, )
09: VAR_043107 (R113Q, chain A/B, )
10: VAR_072191 (D120E, chain A/B, )
11: VAR_072192 (L121H, chain A/B, )
12: VAR_072193 (R126W, chain A/B, )
13: VAR_072194 (R146W, chain A/B, )
14: VAR_072195 (P156R, chain A/B, )
15: VAR_072196 (H160N, chain A/B, )
16: VAR_072197 (P166H, chain A/B, )
17: VAR_072198 (R168H, chain A/B, )
18: VAR_072199 (S170N, chain A/B, )
19: VAR_017572 (V178M, chain A/B, )
20: VAR_072200 (L180R, chain A/B, )
21: VAR_036281 (T181S, chain A/B, )
22: VAR_072201 (R182Q, chain A/B, )
23: VAR_043108 (R186Q, chain A/B, )
24: VAR_072202 (R191W, chain A/B, )
25: VAR_000678 (R193Q, chain A/B, )
26: VAR_072203 (R193W, chain A/B, )
27: VAR_036282 (G200V, chain A/B, )
28: VAR_072204 (A205V, chain A/B, )
29: VAR_072205 (R213Q, chain A/B, )
30: VAR_072206 (L227P, chain A/B, )
31: VAR_072207 (S229R, chain A/B, )
32: VAR_072208 (S229T, chain A/B, )
33: VAR_072209 (D231E, chain A/B, )
34: VAR_043109 (R236W, chain A/B, )
35: VAR_072210 (D237N, chain A/B, )
36: VAR_072211 (M256T, chain A/B, )
37: VAR_072212 (L262P, chain A/B, )
38: VAR_000679 (R286R, chain A/B, )
39: VAR_072213 (L295P, chain A/B, )
40: VAR_072214 (G301R, chain A/B, )
41: VAR_072215 (R306W, chain A/B, )
42: VAR_072216 (D324A, chain A/B, )
43: VAR_072217 (Q326L, chain A/B, )
44: VAR_043110 (V335L, chain A/B, )
45: VAR_072218 (L343F, chain A/B, )
46: VAR_072219 (L343P, chain A/B, )
47: VAR_072220 (M368V, chain A/B, )
48: VAR_017573 (R379C, chain A/B, )
49: VAR_072221 (K380E, chain A/B, )
50: VAR_043111 (M382R, chain A/B, )
51: VAR_017574 (R385C, chain A/B, )
52: VAR_072222 (R385H, chain A/B, )
53: VAR_072223 (R385L, chain A/B, )
54: VAR_072224 (H388Q, chain A/B, )
55: VAR_072225 (S433R, chain A/B, )
56: VAR_072226 (V434L, chain A/B, )
57: VAR_072227 (S447N, chain A/B, )
58: VAR_072228 (R456Q, chain A/B, )
59: VAR_043112 (R456W, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_043106
D
31
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
31
N
02
UniProt
VAR_072186
V
70
A
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
70
A
03
UniProt
VAR_072187
R
94
C
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
94
C
04
UniProt
VAR_072188
R
94
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
94
H
05
UniProt
VAR_000676
R
95
C
ARLY_HUMAN
Disease (ARGINSA)
28940585
A/B
R
95
C
06
UniProt
VAR_072189
R
95
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
95
H
07
UniProt
VAR_072190
A
104
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
A
104
V
08
UniProt
VAR_000677
R
111
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
111
W
09
UniProt
VAR_043107
R
113
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
113
Q
10
UniProt
VAR_072191
D
120
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
120
E
11
UniProt
VAR_072192
L
121
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
121
H
12
UniProt
VAR_072193
R
126
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
126
W
13
UniProt
VAR_072194
R
146
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
146
W
14
UniProt
VAR_072195
P
156
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
P
156
R
15
UniProt
VAR_072196
H
160
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
H
160
N
16
UniProt
VAR_072197
P
166
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
P
166
H
17
UniProt
VAR_072198
R
168
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
168
H
18
UniProt
VAR_072199
S
170
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
170
N
19
UniProt
VAR_017572
V
178
M
ARLY_HUMAN
Disease (ARGINSA)
28941473
A/B
V
178
M
20
UniProt
VAR_072200
L
180
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
180
R
21
UniProt
VAR_036281
T
181
S
ARLY_HUMAN
Unclassified
---
A/B
T
181
S
22
UniProt
VAR_072201
R
182
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
182
Q
23
UniProt
VAR_043108
R
186
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
186
Q
24
UniProt
VAR_072202
R
191
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
191
W
25
UniProt
VAR_000678
R
193
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
193
Q
26
UniProt
VAR_072203
R
193
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
193
W
27
UniProt
VAR_036282
G
200
V
ARLY_HUMAN
Unclassified
---
A/B
G
200
V
28
UniProt
VAR_072204
A
205
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
A
205
V
29
UniProt
VAR_072205
R
213
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
213
Q
30
UniProt
VAR_072206
L
227
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
227
P
31
UniProt
VAR_072207
S
229
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
229
R
32
UniProt
VAR_072208
S
229
T
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
229
T
33
UniProt
VAR_072209
D
231
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
231
E
34
UniProt
VAR_043109
R
236
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
236
W
35
UniProt
VAR_072210
D
237
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
237
N
36
UniProt
VAR_072211
M
256
T
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
256
T
37
UniProt
VAR_072212
L
262
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
262
P
38
UniProt
VAR_000679
Q
286
R
ARLY_HUMAN
Disease (ARGINSA)
28941472
A/B
R
286
R
39
UniProt
VAR_072213
L
295
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
295
P
40
UniProt
VAR_072214
G
301
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
G
301
R
41
UniProt
VAR_072215
R
306
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
306
W
42
UniProt
VAR_072216
D
324
A
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
324
A
43
UniProt
VAR_072217
Q
326
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
Q
326
L
44
UniProt
VAR_043110
V
335
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
335
L
45
UniProt
VAR_072218
L
343
F
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
343
F
46
UniProt
VAR_072219
L
343
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
343
P
47
UniProt
VAR_072220
M
368
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
368
V
48
UniProt
VAR_017573
R
379
C
ARLY_HUMAN
Disease (ARGINSA)
28940287
A/B
R
379
C
49
UniProt
VAR_072221
K
380
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
K
380
E
50
UniProt
VAR_043111
M
382
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
382
R
51
UniProt
VAR_017574
R
385
C
ARLY_HUMAN
Disease (ARGINSA)
28940286
A/B
R
385
C
52
UniProt
VAR_072222
R
385
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
385
H
53
UniProt
VAR_072223
R
385
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
385
L
54
UniProt
VAR_072224
H
388
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
H
388
Q
55
UniProt
VAR_072225
S
433
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
433
R
56
UniProt
VAR_072226
V
434
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
434
L
57
UniProt
VAR_072227
S
447
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
447
N
58
UniProt
VAR_072228
R
456
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
456
Q
59
UniProt
VAR_043112
R
456
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
456
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FUMARATE_LYASES (A:280-289,B:280-289)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FUMARATE_LYASES
PS00163
Fumarate lyases signature.
ARLY_HUMAN
280-289
4
A:280-289
B:280-289
[
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1k62a_ (A:)
1b: SCOP_d1k62b_ (B:)
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(
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(
)
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(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
L-aspartase/fumarase
(39)
Protein domain
:
Argininosuccinate lyase/delta-crystallin
(14)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1k62a_
A:
1b
d1k62b_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1k62A01 (A:27-123,A:195-234)
1b: CATH_1k62B01 (B:27-123,B:195-234)
2a: CATH_1k62A03 (A:365-436)
2b: CATH_1k62B03 (B:365-436)
3a: CATH_1k62A02 (A:124-194,A:235-364,A:437-463)
3b: CATH_1k62B02 (B:124-194,B:235-364,B:437-463)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Human (Homo sapiens)
(2)
1a
1k62A01
A:27-123,A:195-234
1b
1k62B01
B:27-123,B:195-234
Topology
:
Ribonucleotide Reductase Protein R1; domain 1
(62)
Homologous Superfamily
:
Fumarase/aspartase (C-terminal domain)
(42)
Human (Homo sapiens)
(2)
2a
1k62A03
A:365-436
2b
1k62B03
B:365-436
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Human (Homo sapiens)
(2)
3a
1k62A02
A:124-194,A:235-364,A:437-463
3b
1k62B02
B:124-194,B:235-364,B:437-463
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close CATH info
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lyase_1_1k62B01 (B:11-305)
1b: PFAM_Lyase_1_1k62B02 (B:11-305)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Lyase_1]
(27)
Family
:
Lyase_1
(27)
Homo sapiens (Human)
(2)
1a
Lyase_1-1k62B01
B:11-305
1b
Lyase_1-1k62B02
B:11-305
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