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Getting 'Exon' information from database.
1K62
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (297 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN ARGININOSUCCINATE LYASE Q286R MUTANT
Authors
:
L. M. Sampaleanu, F. Vallee, G. D. Thompson, P. L. Howell
Date
:
14 Oct 01 (Deposition) - 01 Feb 02 (Release) - 13 May 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Intragenic Complementation, Arginiosuccinate Lyase, Delta Crystallin, Enzyme Mechanism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Sampaleanu, F. Vallee, G. D. Thompson, P. L. Howell
Three-Dimensional Structure Of The Argininosuccinate Lyase Frequently Complementing Allele Q286R.
Biochemistry V. 40 15570 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(59, 118)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_043106 (D31N, chain A/B, )
02: VAR_072186 (V70A, chain A/B, )
03: VAR_072187 (R94C, chain A/B, )
04: VAR_072188 (R94H, chain A/B, )
05: VAR_000676 (R95C, chain A/B, )
06: VAR_072189 (R95H, chain A/B, )
07: VAR_072190 (A104V, chain A/B, )
08: VAR_000677 (R111W, chain A/B, )
09: VAR_043107 (R113Q, chain A/B, )
10: VAR_072191 (D120E, chain A/B, )
11: VAR_072192 (L121H, chain A/B, )
12: VAR_072193 (R126W, chain A/B, )
13: VAR_072194 (R146W, chain A/B, )
14: VAR_072195 (P156R, chain A/B, )
15: VAR_072196 (H160N, chain A/B, )
16: VAR_072197 (P166H, chain A/B, )
17: VAR_072198 (R168H, chain A/B, )
18: VAR_072199 (S170N, chain A/B, )
19: VAR_017572 (V178M, chain A/B, )
20: VAR_072200 (L180R, chain A/B, )
21: VAR_036281 (T181S, chain A/B, )
22: VAR_072201 (R182Q, chain A/B, )
23: VAR_043108 (R186Q, chain A/B, )
24: VAR_072202 (R191W, chain A/B, )
25: VAR_000678 (R193Q, chain A/B, )
26: VAR_072203 (R193W, chain A/B, )
27: VAR_036282 (G200V, chain A/B, )
28: VAR_072204 (A205V, chain A/B, )
29: VAR_072205 (R213Q, chain A/B, )
30: VAR_072206 (L227P, chain A/B, )
31: VAR_072207 (S229R, chain A/B, )
32: VAR_072208 (S229T, chain A/B, )
33: VAR_072209 (D231E, chain A/B, )
34: VAR_043109 (R236W, chain A/B, )
35: VAR_072210 (D237N, chain A/B, )
36: VAR_072211 (M256T, chain A/B, )
37: VAR_072212 (L262P, chain A/B, )
38: VAR_000679 (R286R, chain A/B, )
39: VAR_072213 (L295P, chain A/B, )
40: VAR_072214 (G301R, chain A/B, )
41: VAR_072215 (R306W, chain A/B, )
42: VAR_072216 (D324A, chain A/B, )
43: VAR_072217 (Q326L, chain A/B, )
44: VAR_043110 (V335L, chain A/B, )
45: VAR_072218 (L343F, chain A/B, )
46: VAR_072219 (L343P, chain A/B, )
47: VAR_072220 (M368V, chain A/B, )
48: VAR_017573 (R379C, chain A/B, )
49: VAR_072221 (K380E, chain A/B, )
50: VAR_043111 (M382R, chain A/B, )
51: VAR_017574 (R385C, chain A/B, )
52: VAR_072222 (R385H, chain A/B, )
53: VAR_072223 (R385L, chain A/B, )
54: VAR_072224 (H388Q, chain A/B, )
55: VAR_072225 (S433R, chain A/B, )
56: VAR_072226 (V434L, chain A/B, )
57: VAR_072227 (S447N, chain A/B, )
58: VAR_072228 (R456Q, chain A/B, )
59: VAR_043112 (R456W, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_043106
D
31
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
31
N
02
UniProt
VAR_072186
V
70
A
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
70
A
03
UniProt
VAR_072187
R
94
C
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
94
C
04
UniProt
VAR_072188
R
94
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
94
H
05
UniProt
VAR_000676
R
95
C
ARLY_HUMAN
Disease (ARGINSA)
28940585
A/B
R
95
C
06
UniProt
VAR_072189
R
95
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
95
H
07
UniProt
VAR_072190
A
104
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
A
104
V
08
UniProt
VAR_000677
R
111
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
111
W
09
UniProt
VAR_043107
R
113
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
113
Q
10
UniProt
VAR_072191
D
120
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
120
E
11
UniProt
VAR_072192
L
121
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
121
H
12
UniProt
VAR_072193
R
126
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
126
W
13
UniProt
VAR_072194
R
146
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
146
W
14
UniProt
VAR_072195
P
156
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
P
156
R
15
UniProt
VAR_072196
H
160
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
H
160
N
16
UniProt
VAR_072197
P
166
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
P
166
H
17
UniProt
VAR_072198
R
168
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
168
H
18
UniProt
VAR_072199
S
170
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
170
N
19
UniProt
VAR_017572
V
178
M
ARLY_HUMAN
Disease (ARGINSA)
28941473
A/B
V
178
M
20
UniProt
VAR_072200
L
180
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
180
R
21
UniProt
VAR_036281
T
181
S
ARLY_HUMAN
Unclassified
---
A/B
T
181
S
22
UniProt
VAR_072201
R
182
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
182
Q
23
UniProt
VAR_043108
R
186
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
186
Q
24
UniProt
VAR_072202
R
191
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
191
W
25
UniProt
VAR_000678
R
193
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
193
Q
26
UniProt
VAR_072203
R
193
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
193
W
27
UniProt
VAR_036282
G
200
V
ARLY_HUMAN
Unclassified
---
A/B
G
200
V
28
UniProt
VAR_072204
A
205
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
A
205
V
29
UniProt
VAR_072205
R
213
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
213
Q
30
UniProt
VAR_072206
L
227
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
227
P
31
UniProt
VAR_072207
S
229
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
229
R
32
UniProt
VAR_072208
S
229
T
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
229
T
33
UniProt
VAR_072209
D
231
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
231
E
34
UniProt
VAR_043109
R
236
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
236
W
35
UniProt
VAR_072210
D
237
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
237
N
36
UniProt
VAR_072211
M
256
T
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
256
T
37
UniProt
VAR_072212
L
262
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
262
P
38
UniProt
VAR_000679
Q
286
R
ARLY_HUMAN
Disease (ARGINSA)
28941472
A/B
R
286
R
39
UniProt
VAR_072213
L
295
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
295
P
40
UniProt
VAR_072214
G
301
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
G
301
R
41
UniProt
VAR_072215
R
306
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
306
W
42
UniProt
VAR_072216
D
324
A
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
D
324
A
43
UniProt
VAR_072217
Q
326
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
Q
326
L
44
UniProt
VAR_043110
V
335
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
335
L
45
UniProt
VAR_072218
L
343
F
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
343
F
46
UniProt
VAR_072219
L
343
P
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
L
343
P
47
UniProt
VAR_072220
M
368
V
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
368
V
48
UniProt
VAR_017573
R
379
C
ARLY_HUMAN
Disease (ARGINSA)
28940287
A/B
R
379
C
49
UniProt
VAR_072221
K
380
E
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
K
380
E
50
UniProt
VAR_043111
M
382
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
M
382
R
51
UniProt
VAR_017574
R
385
C
ARLY_HUMAN
Disease (ARGINSA)
28940286
A/B
R
385
C
52
UniProt
VAR_072222
R
385
H
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
385
H
53
UniProt
VAR_072223
R
385
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
385
L
54
UniProt
VAR_072224
H
388
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
H
388
Q
55
UniProt
VAR_072225
S
433
R
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
433
R
56
UniProt
VAR_072226
V
434
L
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
V
434
L
57
UniProt
VAR_072227
S
447
N
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
S
447
N
58
UniProt
VAR_072228
R
456
Q
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
456
Q
59
UniProt
VAR_043112
R
456
W
ARLY_HUMAN
Disease (ARGINSA)
---
A/B
R
456
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FUMARATE_LYASES (A:280-289,B:280-289)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FUMARATE_LYASES
PS00163
Fumarate lyases signature.
ARLY_HUMAN
280-289
2
A:280-289
B:280-289
[
close PROSITE info
]
Exons
(15, 30)
Info
All Exons
Exon 1.2 (A:15-69 | B:6-69)
Exon 1.3b (A:70-97 | B:70-97)
Exon 1.4a (A:98-116 | B:98-116)
Exon 1.4c (A:117-149 | B:117-149)
Exon 1.5 (A:149-175 | B:149-175)
Exon 1.6a (A:175-201 | B:175-201)
Exon 1.7 (A:201-219 | B:201-219)
Exon 1.8b (A:219-240 | B:219-240)
Exon 1.9 (A:240-278 | B:240-278)
Exon 1.10b (A:278-306 | B:278-306)
Exon 1.10f (A:307-326 | B:307-326)
Exon 1.11 (A:327-354 | B:327-354)
Exon 1.13 (A:355-381 | B:355-381)
Exon 1.14 (A:382-417 | B:382-417)
Exon 1.15c (A:417-464 | B:417-464)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1e/1.2
02: Boundary 1.2/1.3b
03: Boundary 1.3b/1.4a
04: Boundary 1.4a/1.4c
05: Boundary 1.4c/1.5
06: Boundary 1.5/1.6a
07: Boundary 1.6a/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9
10: Boundary 1.9/1.10b
11: Boundary 1.10b/1.10f
12: Boundary 1.10f/1.11
13: Boundary 1.11/1.13
14: Boundary 1.13/1.14
15: Boundary 1.14/1.15c
16: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000395332
1e
ENSE00001892728
chr7:
65540861-65541080
220
ARLY_HUMAN
1-4
4
0
-
-
1.2
ENST00000395332
2
ENSE00001131469
chr7:
65546790-65546984
195
ARLY_HUMAN
5-69
65
2
A:15-69
B:6-69
55
64
1.3b
ENST00000395332
3b
ENSE00001802017
chr7:
65547355-65547438
84
ARLY_HUMAN
70-97
28
2
A:70-97
B:70-97
28
28
1.4a
ENST00000395332
4a
ENSE00001167573
chr7:
65547867-65547923
57
ARLY_HUMAN
98-116
19
2
A:98-116
B:98-116
19
19
1.4c
ENST00000395332
4c
ENSE00001167566
chr7:
65548064-65548161
98
ARLY_HUMAN
117-149
33
2
A:117-149
B:117-149
33
33
1.5
ENST00000395332
5
ENSE00001167562
chr7:
65551572-65551649
78
ARLY_HUMAN
149-175
27
2
A:149-175
B:149-175
27
27
1.6a
ENST00000395332
6a
ENSE00001167557
chr7:
65551731-65551808
78
ARLY_HUMAN
175-201
27
2
A:175-201
B:175-201
27
27
1.7
ENST00000395332
7
ENSE00001167550
chr7:
65552321-65552373
53
ARLY_HUMAN
201-219
19
2
A:201-219
B:201-219
19
19
1.8b
ENST00000395332
8b
ENSE00001167543
chr7:
65552716-65552778
63
ARLY_HUMAN
219-240
22
2
A:219-240
B:219-240
22
22
1.9
ENST00000395332
9
ENSE00002193541
chr7:
65553794-65553908
115
ARLY_HUMAN
240-278
39
2
A:240-278
B:240-278
39
39
1.10b
ENST00000395332
10b
ENSE00002174283
chr7:
65554078-65554162
85
ARLY_HUMAN
278-306
29
2
A:278-306
B:278-306
29
29
1.10f
ENST00000395332
10f
ENSE00002192919
chr7:
65554263-65554322
60
ARLY_HUMAN
307-326
20
2
A:307-326
B:307-326
20
20
1.11
ENST00000395332
11
ENSE00002182971
chr7:
65554599-65554682
84
ARLY_HUMAN
327-354
28
2
A:327-354
B:327-354
28
28
1.13
ENST00000395332
13
ENSE00002163544
chr7:
65556993-65557073
81
ARLY_HUMAN
355-381
27
2
A:355-381
B:355-381
27
27
1.14
ENST00000395332
14
ENSE00002167364
chr7:
65557544-65557650
107
ARLY_HUMAN
382-417
36
2
A:382-417
B:382-417
36
36
1.15c
ENST00000395332
15c
ENSE00001821476
chr7:
65557755-65557918
164
ARLY_HUMAN
417-464
48
2
A:417-464
B:417-464
48
48
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1k62a_ (A:)
1b: SCOP_d1k62b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
L-aspartase/fumarase
(39)
Protein domain
:
Argininosuccinate lyase/delta-crystallin
(14)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1k62a_
A:
1b
d1k62b_
B:
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1k62A01 (A:27-123,A:195-234)
1b: CATH_1k62B01 (B:27-123,B:195-234)
2a: CATH_1k62A03 (A:365-436)
2b: CATH_1k62B03 (B:365-436)
3a: CATH_1k62A02 (A:124-194,A:235-364,A:437-463)
3b: CATH_1k62B02 (B:124-194,B:235-364,B:437-463)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Human (Homo sapiens)
(2)
1a
1k62A01
A:27-123,A:195-234
1b
1k62B01
B:27-123,B:195-234
Topology
:
Ribonucleotide Reductase Protein R1; domain 1
(62)
Homologous Superfamily
:
Fumarase/aspartase (C-terminal domain)
(42)
Human (Homo sapiens)
(2)
2a
1k62A03
A:365-436
2b
1k62B03
B:365-436
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Human (Homo sapiens)
(2)
3a
1k62A02
A:124-194,A:235-364,A:437-463
3b
1k62B02
B:124-194,B:235-364,B:437-463
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Pfam Domains
(1, 2)
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1a: PFAM_Lyase_1_1k62B01 (B:11-305)
1b: PFAM_Lyase_1_1k62B02 (B:11-305)
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Clan
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no clan defined [family: Lyase_1]
(27)
Family
:
Lyase_1
(27)
Homo sapiens (Human)
(2)
1a
Lyase_1-1k62B01
B:11-305
1b
Lyase_1-1k62B02
B:11-305
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