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1K47
Asym. Unit
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Asym.Unit (327 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (57 KB)
Biol.Unit 5 (58 KB)
Biol.Unit 6 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE PHOSPHOMEVALONATE KINASE (PMK)
Authors
:
M. J. Romanowski, J. B. Bonanno, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
05 Oct 01 (Deposition) - 08 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Alpha/Beta Single Domain Belonging To The Ghmp Kinase Superfamily, Mvak2, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Romanowski, J. B. Bonanno, S. K. Burley
Crystal Structure Of The Streptococcus Pneumoniae Phosphomevalonate Kinase, A Member Of The Ghmp Kinase Superfamily.
Proteins V. 47 568 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 48)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
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No.
Name
Count
Type
Full Name
1
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1k47a2 (A:195-329)
1b: SCOP_d1k47b2 (B:195-329)
1c: SCOP_d1k47c2 (C:195-329)
1d: SCOP_d1k47d2 (D:195-329)
1e: SCOP_d1k47e2 (E:195-329)
1f: SCOP_d1k47f2 (F:195-329)
2a: SCOP_d1k47a1 (A:1-194)
2b: SCOP_d1k47b1 (B:1-194)
2c: SCOP_d1k47c1 (C:1-194)
2d: SCOP_d1k47d1 (D:1-194)
2e: SCOP_d1k47e1 (E:1-194)
2f: SCOP_d1k47f1 (F:1-194)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
GHMP Kinase, C-terminal domain
(25)
Family
:
Phosphomevalonate kinase (PMK)
(2)
Protein domain
:
Phosphomevalonate kinase (PMK)
(1)
Streptococcus pneumoniae r6 [TaxId: 171101]
(1)
1a
d1k47a2
A:195-329
1b
d1k47b2
B:195-329
1c
d1k47c2
C:195-329
1d
d1k47d2
D:195-329
1e
d1k47e2
E:195-329
1f
d1k47f2
F:195-329
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
GHMP Kinase, N-terminal domain
(19)
Protein domain
:
Phosphomevalonate kinase (PMK)
(1)
Streptococcus pneumoniae r6 [TaxId: 171101]
(1)
2a
d1k47a1
A:1-194
2b
d1k47b1
B:1-194
2c
d1k47c1
C:1-194
2d
d1k47d1
D:1-194
2e
d1k47e1
E:1-194
2f
d1k47f1
F:1-194
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1k47A02 (A:196-329)
1b: CATH_1k47B02 (B:196-329)
1c: CATH_1k47C02 (C:196-329)
1d: CATH_1k47D02 (D:196-329)
1e: CATH_1k47E02 (E:196-329)
1f: CATH_1k47F02 (F:196-329)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.890, no name defined]
(18)
Streptococcus pneumoniae r6. Organism_taxid: 171101. Strain: atcc baa-255 / r6.
(1)
1a
1k47A02
A:196-329
1b
1k47B02
B:196-329
1c
1k47C02
C:196-329
1d
1k47D02
D:196-329
1e
1k47E02
E:196-329
1f
1k47F02
F:196-329
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_GHMP_kinases_N_1k47F01 (F:88-157)
1b: PFAM_GHMP_kinases_N_1k47F02 (F:88-157)
1c: PFAM_GHMP_kinases_N_1k47F03 (F:88-157)
1d: PFAM_GHMP_kinases_N_1k47F04 (F:88-157)
1e: PFAM_GHMP_kinases_N_1k47F05 (F:88-157)
1f: PFAM_GHMP_kinases_N_1k47F06 (F:88-157)
2a: PFAM_GHMP_kinases_C_1k47F07 (F:216-322)
2b: PFAM_GHMP_kinases_C_1k47F08 (F:216-322)
2c: PFAM_GHMP_kinases_C_1k47F09 (F:216-322)
2d: PFAM_GHMP_kinases_C_1k47F10 (F:216-322)
2e: PFAM_GHMP_kinases_C_1k47F11 (F:216-322)
2f: PFAM_GHMP_kinases_C_1k47F12 (F:216-322)
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)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
S5
(103)
Family
:
GHMP_kinases_N
(23)
Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
(2)
1a
GHMP_kinases_N-1k47F01
F:88-157
1b
GHMP_kinases_N-1k47F02
F:88-157
1c
GHMP_kinases_N-1k47F03
F:88-157
1d
GHMP_kinases_N-1k47F04
F:88-157
1e
GHMP_kinases_N-1k47F05
F:88-157
1f
GHMP_kinases_N-1k47F06
F:88-157
Clan
:
no clan defined [family: GHMP_kinases_C]
(13)
Family
:
GHMP_kinases_C
(13)
Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
(2)
2a
GHMP_kinases_C-1k47F07
F:216-322
2b
GHMP_kinases_C-1k47F08
F:216-322
2c
GHMP_kinases_C-1k47F09
F:216-322
2d
GHMP_kinases_C-1k47F10
F:216-322
2e
GHMP_kinases_C-1k47F11
F:216-322
2f
GHMP_kinases_C-1k47F12
F:216-322
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