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(-) Description

Title :  CRYSTAL STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE PHOSPHOMEVALONATE KINASE (PMK)
 
Authors :  M. J. Romanowski, J. B. Bonanno, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  05 Oct 01  (Deposition) - 08 May 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Alpha/Beta Single Domain Belonging To The Ghmp Kinase Superfamily, Mvak2, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Romanowski, J. B. Bonanno, S. K. Burley
Crystal Structure Of The Streptococcus Pneumoniae Phosphomevalonate Kinase, A Member Of The Ghmp Kinase Superfamily.
Proteins V. 47 568 2002
PubMed-ID: 12001237  |  Reference-DOI: 10.1002/PROT.10118.ABS
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOMEVALONATE KINASE
    Chains: A, B, C, D, E, F
    EC Number: 2.7.4.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PGEX6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: MVAK2
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE R6
    Organism Taxid: 171101
    Strain: ATCC BAA-255 / R6

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 48)

Asymmetric Unit (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1K47)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1K47)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1K47)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1K47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1K47)

(-) Exons   (0, 0)

(no "Exon" information available for 1K47)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47a1 A:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47a2 A:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47A02 A:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeeehhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhh....eeee......eeeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee.......eeeeee.hhhhhhhhhhhhhhh..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 A 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                             ||                               34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                          1002-MSE                                                                                                                                                                                                                                                                                                                                     
                              1-MSE                                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47b1 B:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47b2 B:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47B02 B:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhh..eeee..hhhhhhhhhh..hhhhhhhh....eeee......eeeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee......eeeeeee.hhhhhhhhhhhhhhh..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 B 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                          1002-MSE                            34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                              1-MSE                                                                                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47c1 C:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47c2 C:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47C02 C:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeeehhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh......hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhh....eeee......eeeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee.......eeeeee.hhhhhhhhhhhhhhh..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 C 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                          1002-MSE                            34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                              1-MSE                                                                                                                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47d1 D:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47d2 D:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47D02 D:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeeehhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh......hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhh....eeee.......eeeeee.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee.......eeeeee.hhhhhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 D 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                          1002-MSE                            34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                              1-MSE                                                                                                                                                                                                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47e1 E:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47e2 E:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47E02 E:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeeehhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhh..eeee..hhhhhhhhh...hhhhhhhh....eeee......eeeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee.......eeeeee.hhhhhhhhhhhhhhhh.eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 E 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                          1002-MSE                            34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                              1-MSE                                                                                                                                                                                                                                                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:322
 aligned with Q8DR49_STRR6 | Q8DR49 from UniProtKB/TrEMBL  Length:335

    Alignment length:331
                              1                                                                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
        Q8DR49_STRR6      - --MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
               SCOP domains --d1k47f1 F:1-194 Phosphomevalonate kinase (PMK)                                                                                                                                                    d1k47f2 F:195-329 Phosphomevalonate kinase (PMK)                                                                                        SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1k47F02 F:196-329  [code=3.30.70.890, no name defined]                                                                                 CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F01 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F07 F:216-322                                                                           ------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F02 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F08 F:216-322                                                                           ------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F03 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F09 F:216-322                                                                           ------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F04 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F10 F:216-322                                                                           ------- Pfam domains (4)
           Pfam domains (5) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F05 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F11 F:216-322                                                                           ------- Pfam domains (5)
           Pfam domains (6) -----------------------------------------------------------------------------------------GHMP_kinases_N-1k47F06 F:88-157                                       ----------------------------------------------------------GHMP_kinases_C-1k47F12 F:216-322                                                                           ------- Pfam domains (6)
         Sec.struct. author ...eeeeeeeeeeee..hhhhh...eeeeeeeeeeeeeeeee....eeeee.---------..hhhhhhhhhhhhhhhhhhh......eeeeee............hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhh....eeee......eeeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeeee.......eeeeee.hhhhhhhhhhhhhhhh.eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1k47 F 1001 HmmIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYmRAEIAFSDSYRIYSDm---------NPDYSLIQETIALmGDFLAVRGQNLRPFSLAIYGKmEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSmGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHmVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI  329
                             ||      8        18        28     |  38        48 |       - |      68    |   78        88      | 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328 
                          1002-MSE                            34-MSE          50-MSE    60           73-MSE                95-MSE                                              148-MSE                                                             216-MSE                                                                                                             
                              1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
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Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
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Clan: S5 (103)
(-)
Clan: no clan defined [family: GHMP_kinases_C] (13)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q8DR49_STRR6 | Q8DR49)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8DR49_STRR6 | Q8DR49: 3gon

(-) Related Entries Specified in the PDB File

1fi4 1FI4 IS MEVALONATE-5-DIPHOSPHATE DECARBOXYLASE WHICH IS TWO STEPS AFTER PHOSPHOMEVALONATE KINASE IN ISOPRENOID BIOSYNTHESIS. BOTH BELONG TO THE GHMP SUPERFAMILY OF SMALL MOLECULE KINASES. RELATED ID: NYSGXRC-T27 RELATED DB: TARGETDB