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1JMU
Asym. Unit
Info
Asym.Unit (485 KB)
Biol.Unit 1 (477 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE REOVIRUS MU1/SIGMA3 COMPLEX
Authors
:
S. Liemann, M. L. Nibert, S. C. Harrison
Date
:
20 Jul 01 (Deposition) - 06 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Keywords
:
Protein-Protein Complex, Jelly Roll, Zinc Finger, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Liemann, K. Chandran, T. S. Baker, M. L. Nibert, S. C. Harrison
Structure Of The Reovirus Membrane-Penetration Protein, Mu1, In A Complex With Is Protector Protein, Sigma3.
Cell(Cambridge, Mass. ) V. 108 283 2002
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
2c: B-OCTYLGLUCOSIDE (BOGc)
3a: CHLORIDE ION (CLa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
2
BOG
3
Ligand/Ion
B-OCTYLGLUCOSIDE
3
CL
1
Ligand/Ion
CHLORIDE ION
4
SO4
9
Ligand/Ion
SULFATE ION
5
ZN
3
Ligand/Ion
ZINC ION
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:13 , ASP B:220 , ARG B:230 , ALA B:236 , ALA B:237 , LEU B:240 , TRP B:249
BINDING SITE FOR RESIDUE BOG B 709
02
AC2
SOFTWARE
VAL C:13 , ASP D:220 , ARG D:230 , ALA D:236 , ALA D:237 , LEU D:240 , TRP D:249
BINDING SITE FOR RESIDUE BOG D 709
03
AC3
SOFTWARE
VAL E:13 , ASP F:220 , ARG F:230 , ALA F:236 , ALA F:237 , LEU F:240 , TRP F:249
BINDING SITE FOR RESIDUE BOG F 709
04
AC4
SOFTWARE
CYS I:51 , CYS I:54 , HIS I:71 , CYS I:73
BINDING SITE FOR RESIDUE ZN I 701
05
AC5
SOFTWARE
CYS G:51 , CYS G:54 , HIS G:71 , CYS G:73
BINDING SITE FOR RESIDUE ZN G 702
06
AC6
SOFTWARE
CYS H:51 , CYS H:54 , HIS H:71 , CYS H:73
BINDING SITE FOR RESIDUE ZN H 703
07
AC7
SOFTWARE
LYS B:339 , THR B:340 , MET B:341 , GLY B:342 , THR B:343 , GLY B:363
BINDING SITE FOR RESIDUE SO4 B 710
08
AC8
SOFTWARE
LYS D:339 , THR D:340 , MET D:341 , GLY D:342 , THR D:343 , GLY D:363
BINDING SITE FOR RESIDUE SO4 D 710
09
AC9
SOFTWARE
LYS F:339 , THR F:340 , MET F:341 , GLY F:342 , THR F:343 , GLY F:363
BINDING SITE FOR RESIDUE SO4 F 710
10
BC1
SOFTWARE
GLN G:39 , ARG G:78 , HIS G:79 , HOH G:721
BINDING SITE FOR RESIDUE SO4 G 504
11
BC2
SOFTWARE
ARG H:78 , HIS H:79 , HOH H:706
BINDING SITE FOR RESIDUE SO4 H 505
12
BC3
SOFTWARE
GLN I:39 , ARG I:78 , HIS I:79
BINDING SITE FOR RESIDUE SO4 I 506
13
BC4
SOFTWARE
ARG G:312 , GLY G:318
BINDING SITE FOR RESIDUE SO4 G 507
14
BC5
SOFTWARE
HOH D:747 , ARG H:312 , GLY H:318
BINDING SITE FOR RESIDUE SO4 H 508
15
BC6
SOFTWARE
HOH F:718 , ARG I:312 , GLY I:318
BINDING SITE FOR RESIDUE SO4 I 509
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1jmug_ (G:)
1b: SCOP_d1jmuh_ (H:)
1c: SCOP_d1jmui_ (I:)
2a: SCOP_d1jmu_1 (A:,B:)
2b: SCOP_d1jmu_2 (C:,D:)
2c: SCOP_d1jmu_3 (E:,F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Outer capsid protein sigma 3
(3)
Superfamily
:
Outer capsid protein sigma 3
(3)
Family
:
Outer capsid protein sigma 3
(3)
Protein domain
:
Outer capsid protein sigma 3
(3)
Reovirus [TaxId: 10891]
(3)
1a
d1jmug_
G:
1b
d1jmuh_
H:
1c
d1jmui_
I:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Membrane penetration protein mu1
(1)
Superfamily
:
Membrane penetration protein mu1
(1)
Family
:
Membrane penetration protein mu1
(1)
Protein domain
:
Membrane penetration protein mu1
(1)
Reovirus [TaxId: 10891]
(1)
2a
d1jmu.1
A:,B:
2b
d1jmu.2
C:,D:
2c
d1jmu.3
E:,F:
[
close SCOP info
]
CATH Domains
(6, 18)
Info
all CATH domains
1a: CATH_1jmuG02 (G:91-286,G:337-365)
1b: CATH_1jmuH02 (H:91-286,H:337-365)
1c: CATH_1jmuI02 (I:91-286,I:337-365)
2a: CATH_1jmuG01 (G:1-90,G:287-336)
2b: CATH_1jmuH01 (H:1-90,H:287-336)
2c: CATH_1jmuI01 (I:1-90,I:287-336)
3a: CATH_1jmuB01 (B:43-187)
3b: CATH_1jmuD01 (D:43-187)
3c: CATH_1jmuF01 (F:43-187)
4a: CATH_1jmuB02 (B:188-277,B:642-675)
4b: CATH_1jmuD02 (D:188-277,D:642-675)
4c: CATH_1jmuF02 (F:188-277,F:642-675)
5a: CATH_1jmuB03 (B:278-306,B:514-641)
5b: CATH_1jmuD03 (D:278-306,D:514-641)
5c: CATH_1jmuF03 (F:278-306,F:514-641)
6a: CATH_1jmuB04 (B:307-513)
6b: CATH_1jmuD04 (D:307-513)
6c: CATH_1jmuF04 (F:307-513)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Outer-capsid protein sigma 3, large lobe
(2)
Homologous Superfamily
:
Outer-capsid protein sigma 3, large lobe
(2)
Reovirus sp.. Organism_taxid: 10891.
(1)
1a
1jmuG02
G:91-286,G:337-365
1b
1jmuH02
H:91-286,H:337-365
1c
1jmuI02
I:91-286,I:337-365
Topology
:
Outer-capsid protein sigma 3, small lobe
(2)
Homologous Superfamily
:
Outer-capsid protein sigma 3, small lobe
(2)
Reovirus sp.. Organism_taxid: 10891.
(1)
2a
1jmuG01
G:1-90,G:287-336
2b
1jmuH01
H:1-90,H:287-336
2c
1jmuI01
I:1-90,I:287-336
Topology
:
Protein mu-1, chain B, domain 1
(1)
Homologous Superfamily
:
Protein mu-1, chain B, domain 1
(1)
Reovirus sp.. Organism_taxid: 10891.
(1)
3a
1jmuB01
B:43-187
3b
1jmuD01
D:43-187
3c
1jmuF01
F:43-187
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Protein mu-1, chain B, domain 2
(1)
Homologous Superfamily
:
Protein mu-1, chain B, domain 2
(1)
Reovirus sp.. Organism_taxid: 10891.
(1)
4a
1jmuB02
B:188-277,B:642-675
4b
1jmuD02
D:188-277,D:642-675
4c
1jmuF02
F:188-277,F:642-675
Topology
:
Protein mu-1, chain B, domain 3
(1)
Homologous Superfamily
:
Protein mu-1, chain B, domain 3
(1)
Reovirus sp.. Organism_taxid: 10891.
(1)
5a
1jmuB03
B:278-306,B:514-641
5b
1jmuD03
D:278-306,D:514-641
5c
1jmuF03
F:278-306,F:514-641
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Membrane penetration protein mu1, Chain B, domain 4
(1)
Reovirus sp.. Organism_taxid: 10891.
(1)
6a
1jmuB04
B:307-513
6b
1jmuD04
D:307-513
6c
1jmuF04
F:307-513
[
close CATH info
]
Pfam Domains
(2, 9)
Info
all PFAM domains
1a: PFAM_Reovirus_M2_1jmuF01 (F:43-675)
1b: PFAM_Reovirus_M2_1jmuF02 (F:43-675)
1c: PFAM_Reovirus_M2_1jmuF03 (F:43-675)
1d: PFAM_Reovirus_M2_1jmuF04 (F:43-675)
1e: PFAM_Reovirus_M2_1jmuF05 (F:43-675)
1f: PFAM_Reovirus_M2_1jmuF06 (F:43-675)
2a: PFAM_Reovirus_cap_1jmuI01 (I:1-365)
2b: PFAM_Reovirus_cap_1jmuI02 (I:1-365)
2c: PFAM_Reovirus_cap_1jmuI03 (I:1-365)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Reovirus_M2]
(1)
Family
:
Reovirus_M2
(1)
Reovirus type 1 (strain Lang) (T1L) (Mammalian orthoreovirus 1)
(1)
1a
Reovirus_M2-1jmuF01
F:43-675
1b
Reovirus_M2-1jmuF02
F:43-675
1c
Reovirus_M2-1jmuF03
F:43-675
1d
Reovirus_M2-1jmuF04
F:43-675
1e
Reovirus_M2-1jmuF05
F:43-675
1f
Reovirus_M2-1jmuF06
F:43-675
Clan
:
no clan defined [family: Reovirus_cap]
(1)
Family
:
Reovirus_cap
(1)
Reovirus type 1 (strain Lang) (T1L) (Mammalian orthoreovirus 1)
(1)
2a
Reovirus_cap-1jmuI01
I:1-365
2b
Reovirus_cap-1jmuI02
I:1-365
2c
Reovirus_cap-1jmuI03
I:1-365
[
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]
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