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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1JKD
Asym. Unit
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Asym.Unit (27 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
HUMAN LYSOZYME MUTANT WITH TRP 109 REPLACED BY ALA
Authors
:
M. Muraki, K. Harata, S. Goda, H. Nagahora
Date
:
13 Nov 96 (Deposition) - 15 May 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Muramidase, Hydrolase (O-Glycosyl), Glycosidase, Lysozyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Muraki, S. Goda, H. Nagahora, K. Harata
Importance Of Van Der Waals Contact Between Glu 35 And Trp 109 To The Catalytic Action Of Human Lysozyme.
Protein Sci. V. 6 473 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NITRATE ION (NO3a)
1b: NITRATE ION (NO3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NO3
2
Ligand/Ion
NITRATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:4 , CYS A:6 , GLU A:7 , ARG A:14 , HOH A:170
BINDING SITE FOR RESIDUE NO3 A 131
2
AC2
SOFTWARE
ASN A:27 , ASN A:66 , ASN A:75 , LEU A:79 , HOH A:135 , HOH A:166 , HOH A:194
BINDING SITE FOR RESIDUE NO3 A 132
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004280 (I56T, chain A, )
2: VAR_004281 (D67H, chain A, )
3: VAR_012050 (T70N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004280
I
74
T
LYSC_HUMAN
Disease (AMYL8)
---
A
I
56
T
2
UniProt
VAR_004281
D
85
H
LYSC_HUMAN
Disease (AMYL8)
---
A
D
67
H
3
UniProt
VAR_012050
T
88
N
LYSC_HUMAN
Polymorphism
1800973
A
T
70
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-130)
2: LACTALBUMIN_LYSOZYME_1 (A:77-95)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_HUMAN
19-148
1
A:1-130
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_HUMAN
95-113
1
A:77-95
[
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-28)
Exon 1.2 (A:28-83)
Exon 1.3 (A:83-109)
Exon 1.4 (A:109-130)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261267
1
ENSE00000920754
chr12:
69742134-69742324
191
LYSC_HUMAN
1-46
46
1
A:1-28
28
1.2
ENST00000261267
2
ENSE00000920753
chr12:
69743888-69744052
165
LYSC_HUMAN
46-101
56
1
A:28-83
56
1.3
ENST00000261267
3
ENSE00000920752
chr12:
69746000-69746078
79
LYSC_HUMAN
101-127
27
1
A:83-109
27
1.4
ENST00000261267
4
ENSE00001263888
chr12:
69746933-69748013
1081
LYSC_HUMAN
127-148
22
1
A:109-130
22
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jkda_ (A:)
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Classes
(
)
(
)
Folds
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Human (Homo sapiens) [TaxId: 9606]
(200)
1a
d1jkda_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jkdA00 (A:1-130)
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(
)
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)
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)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Human (Homo sapiens)
(206)
1a
1jkdA00
A:1-130
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lys_1jkdA01 (A:1-128)
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Select:
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Clans
(
)
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(
)
Clan
:
Lysozyme
(266)
Family
:
Lys
(245)
Homo sapiens (Human)
(62)
1a
Lys-1jkdA01
A:1-128
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Chain A
Asymmetric Unit 1
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