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1JGN
Asym. Unit
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Asym.Unit (912 KB)
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Models
(30 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL PABC DOMAIN OF HUMAN POLY(A)-BINDING PROTEIN IN COMPLEX WITH THE PEPTIDE FROM PAIP2
Authors
:
G. Kozlov, N. Siddiqui, S. Coillet-Matillon, I. Ekiel, K. Gehring
Date
:
26 Jun 01 (Deposition) - 24 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (30 x)
Keywords
:
All-Helical Domain, Protein-Peptide Complex, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Kozlov, G. De Crescenzo, N. S. Lim, N. Siddiqui, D. Fantus, A. Kahvejian, J. F. Trempe, D. Elias, I. Ekiel, N. Sonenberg, M. O'Connor-Mccourt, K. Gehring
Structural Basis Of Ligand Recognition By Pabc, A Highly Specific Peptide-Binding Domain Found In Poly(A)-Binding Protein And A Hect Ubiquitin Ligase
Embo J. V. 23 272 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PABC (A:6-81)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PABC
PS51309
Poly(A)-binding protein C-terminal (PABC) domain profile.
PABP1_HUMAN
542-619
1
A:6-81
[
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Exons
(6, 6)
Info
All Exons
Exon 1.10b (A:1-2)
Exon 1.11 (A:3-25 (gaps))
Exon 1.12a (A:25-68)
Exon 1.13a (A:69-98)
Exon 2.4b (B:1-1)
Exon 2.5e (B:2-22)
View:
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All Exon Boundaries
1: Boundary 1.9b/1.10b
2: Boundary 1.10b/1.11
3: Boundary 1.11/1.12a
4: Boundary 1.12a/1.13a
5: Boundary 1.13a/1.14e
6: Boundary 2.3a/2.4b
7: Boundary 2.4b/2.5e
8: Boundary 2.5e/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000318607
1e
ENSE00002107718
chr8:
101734940-101733619
1322
PABP1_HUMAN
1-65
65
0
-
-
1.2e
ENST00000318607
2e
ENSE00002179154
chr8:
101730508-101730315
194
PABP1_HUMAN
65-129
65
0
-
-
1.2i
ENST00000318607
2i
ENSE00001088711
chr8:
101730116-101730001
116
PABP1_HUMAN
130-168
39
0
-
-
1.3b
ENST00000318607
3b
ENSE00001676241
chr8:
101727829-101727690
140
PABP1_HUMAN
168-215
48
0
-
-
1.4c
ENST00000318607
4c
ENSE00001088702
chr8:
101725409-101725315
95
PABP1_HUMAN
215-246
32
0
-
-
1.5a
ENST00000318607
5a
ENSE00001088717
chr8:
101725017-101724880
138
PABP1_HUMAN
247-292
46
0
-
-
1.6a
ENST00000318607
6a
ENSE00001088710
chr8:
101724685-101724590
96
PABP1_HUMAN
293-324
32
0
-
-
1.7b
ENST00000318607
7b
ENSE00002184139
chr8:
101721959-101721687
273
PABP1_HUMAN
325-415
91
0
-
-
1.8c
ENST00000318607
8c
ENSE00001088708
chr8:
101721451-101721361
91
PABP1_HUMAN
416-446
31
0
-
-
1.9b
ENST00000318607
9b
ENSE00001088705
chr8:
101719225-101719115
111
PABP1_HUMAN
446-483
38
0
-
-
1.10b
ENST00000318607
10b
ENSE00002199412
chr8:
101719033-101718879
155
PABP1_HUMAN
483-534
52
1
A:1-2
2
1.11
ENST00000318607
11
ENSE00001088703
chr8:
101717901-101717817
85
PABP1_HUMAN
535-563
29
1
A:3-25 (gaps)
24
1.12a
ENST00000318607
12a
ENSE00001088713
chr8:
101717284-101717154
131
PABP1_HUMAN
563-606
44
1
A:25-68
44
1.13a
ENST00000318607
13a
ENSE00001088716
chr8:
101716618-101716525
94
PABP1_HUMAN
607-636
30
1
A:69-98
30
1.14e
ENST00000318607
14e
ENSE00001378950
chr8:
101715587-101715144
444
PABP1_HUMAN
-
0
0
-
-
2.2a
ENST00000394795
2a
ENSE00002078456
chr5:
138678131-138679095
965
PAIP2_HUMAN
-
0
0
-
-
2.3a
ENST00000394795
3a
ENSE00002142227
chr5:
138699448-138699611
164
PAIP2_HUMAN
1-46
46
0
-
-
2.4b
ENST00000394795
4b
ENSE00000817513
chr5:
138700253-138700432
180
PAIP2_HUMAN
47-106
60
1
B:1-1
1
2.5e
ENST00000394795
5e
ENSE00001317427
chr5:
138704422-138705406
985
PAIP2_HUMAN
107-127
21
1
B:2-22
21
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jgna_ (A:)
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Protein Domains
(
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(
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
PABP domain-like
(63)
Superfamily
:
PABC (PABP) domain
(12)
Family
:
PABC (PABP) domain
(11)
Protein domain
:
poly(A) binding protein
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1jgna_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jgnA00 (A:1-98)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
c-terminal domain of poly(a) binding protein
(10)
Homologous Superfamily
:
c-terminal domain of poly(a) binding protein
(8)
Human (Homo sapiens)
(4)
1a
1jgnA00
A:1-98
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_PABP_1jgnA01 (A:6-76)
2a: PFAM_PAM2_1jgnB01 (B:2-18)
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Clan
:
no clan defined [family: PABP]
(14)
Family
:
PABP
(14)
Homo sapiens (Human)
(13)
1a
PABP-1jgnA01
A:6-76
Clan
:
no clan defined [family: PAM2]
(7)
Family
:
PAM2
(7)
Homo sapiens (Human)
(7)
2a
PAM2-1jgnB01
B:2-18
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