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1JDN
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HORMONE RECEPTOR
Authors
:
X. -L. He, D. -C. Chow, M. M. Martick, K. C. Garcia
Date
:
14 Jun 01 (Deposition) - 05 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Natriuretic Peptide Receptor, Dimer, Allosteric Activation, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. L. He, D. C. Chow, M. M. Martick, K. C. Garcia
Allosteric Activation Of A Spring-Loaded Natriuretic Peptid Receptor Dimer By Hormone.
Science V. 293 1657 2001
[
close entry info
]
Hetero Components
(6, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: ALPHA-L-FUCOSE (FUCa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:248 , LEU A:279 , LEU A:280 , ARG A:281 , THR A:282 , GLU A:314 , NDG A:441
BINDING SITE FOR RESIDUE NDG A 440
02
AC2
SOFTWARE
ARG A:281 , THR A:282 , VAL A:283 , GLU A:288 , NDG A:440 , BMA A:442
BINDING SITE FOR RESIDUE NDG A 441
03
AC3
SOFTWARE
VAL A:283 , NDG A:441 , MAN A:443 , BMA A:445
BINDING SITE FOR RESIDUE BMA A 442
04
AC4
SOFTWARE
GLU A:288 , BMA A:442 , BMA A:444
BINDING SITE FOR RESIDUE MAN A 443
05
AC5
SOFTWARE
GLU A:288 , MET A:292 , MAN A:443
BINDING SITE FOR RESIDUE BMA A 444
06
AC6
SOFTWARE
BMA A:442
BINDING SITE FOR RESIDUE BMA A 445
07
AC7
SOFTWARE
HIS A:328 , LEU A:331 , ARG A:332 , THR A:351 , LYS A:393 , NAG A:447 , NAG A:448
BINDING SITE FOR RESIDUE FUC A 446
08
AC8
SOFTWARE
LEU A:331 , ARG A:332 , ASN A:349 , ALA A:363 , FUC A:446 , NAG A:448
BINDING SITE FOR RESIDUE NAG A 447
09
AC9
SOFTWARE
GLY A:334 , FUC A:446 , NAG A:447 , MAN A:449
BINDING SITE FOR RESIDUE NAG A 448
10
BC1
SOFTWARE
NAG A:448 , BMA A:450
BINDING SITE FOR RESIDUE MAN A 449
11
BC2
SOFTWARE
MAN A:449
BINDING SITE FOR RESIDUE BMA A 450
12
BC3
SOFTWARE
PRO A:15 , PHE A:22 , SER A:61 , PRO A:89 , VAL A:90 , CYS A:91
BINDING SITE FOR RESIDUE CL A 451
13
BC4
SOFTWARE
ARG A:66 , HIS A:104
BINDING SITE FOR RESIDUE CL A 452
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ANF_RECEPTORS (A:88-105)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANF_RECEPTORS
PS00458
Natriuretic peptides receptors signature.
ANPRC_HUMAN
133-150
1
A:88-105
[
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Exons
(6, 6)
Info
All Exons
Exon 1.3a (A:5-212 (gaps))
Exon 1.5 (A:212-253)
Exon 1.6 (A:253-308)
Exon 1.7 (A:309-354)
Exon 1.8 (A:354-385)
Exon 1.9a (A:386-418)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9a
7: Boundary 1.9a/1.10a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000265074
3a
ENSE00001917259
chr5:
32711540-32712651
1112
ANPRC_HUMAN
1-257
257
1
A:5-212 (gaps)
208
1.5
ENST00000265074
5
ENSE00000735248
chr5:
32724804-32724926
123
ANPRC_HUMAN
257-298
42
1
A:212-253
42
1.6
ENST00000265074
6
ENSE00000971354
chr5:
32738970-32739136
167
ANPRC_HUMAN
298-353
56
1
A:253-308
56
1.7
ENST00000265074
7
ENSE00002059415
chr5:
32774814-32774949
136
ANPRC_HUMAN
354-399
46
1
A:309-354
46
1.8
ENST00000265074
8
ENSE00001082097
chr5:
32780828-32780922
95
ANPRC_HUMAN
399-430
32
1
A:354-385
32
1.9a
ENST00000265074
9a
ENSE00002167695
chr5:
32782999-32783134
136
ANPRC_HUMAN
431-476
46
1
A:386-418
33
1.10a
ENST00000265074
10a
ENSE00001164694
chr5:
32784902-32784989
88
ANPRC_HUMAN
476-505
30
0
-
-
1.11d
ENST00000265074
11d
ENSE00001938989
chr5:
32786340-32787256
917
ANPRC_HUMAN
505-541
37
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jdna_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like I
(179)
Superfamily
:
Periplasmic binding protein-like I
(179)
Family
:
L-arabinose binding protein-like
(114)
Protein domain
:
Hormone binding domain of the atrial natriuretic peptide receptor
(5)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1jdna_
A:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jdnA01 (A:135-281,A:369-400)
1b: CATH_1jdnA02 (A:5-134,A:284-368)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Human (Homo sapiens)
(5)
1a
1jdnA01
A:135-281,A:369-400
1b
1jdnA02
A:5-134,A:284-368
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ANF_receptor_1jdnA01 (A:26-379)
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Clans
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(
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(
)
Clan
:
Periplas_BP
(97)
Family
:
ANF_receptor
(21)
Homo sapiens (Human)
(7)
1a
ANF_receptor-1jdnA01
A:26-379
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Chain A
Asymmetric Unit 1
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