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1J1L
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PIRIN: A BCL-3 AND NUCLEAR FACTOR I INTERACTING PROTEIN AND A CUPIN SUPERFAMILY MEMBER
Authors
:
H. Pang, M. Bartlam, Q. Zeng, G. F. Gao, Z. Rao
Date
:
10 Dec 02 (Deposition) - 16 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Sandwich, Cupin, Iron, Metatl Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Pang, M. Bartlam, Q. Zeng, H. Miyatake, T. Hisano, K. Miki, L. L. Wong, G. F. Gao, Z. Rao
Crystal Structure Of Human Pirin: An Iron-Binding Nuclear Protein And Transcription Cofactor
J. Biol. Chem. V. 279 1491 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:101 , GLU A:103 , HOH A:1002 , HOH A:1003
BINDING SITE FOR RESIDUE FE2 A 1001
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050543 (V228A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050543
V
228
A
PIR_HUMAN
Polymorphism
34104000
A
V
228
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(9, 9)
Info
All Exons
Exon 1.2a (A:3-32)
Exon 1.3 (A:33-63)
Exon 1.5 (A:64-91)
Exon 1.6 (A:92-160)
Exon 1.8 (A:161-189)
Exon 1.9b (A:189-204)
Exon 1.10 (A:204-231)
Exon 1.11a (A:232-254)
Exon 1.12 (A:254-290)
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All Exon Boundaries
01: Boundary 1.1a/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.10
08: Boundary 1.10/1.11a
09: Boundary 1.11a/1.12
10: Boundary 1.12/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000380421
1a
ENSE00001919512
X:15511687-15511279
409
PIR_HUMAN
-
0
0
-
-
1.2a
ENST00000380421
2a
ENSE00002157436
X:15509432-15509285
148
PIR_HUMAN
1-32
32
1
A:3-32
30
1.3
ENST00000380421
3
ENSE00000385079
X:15497944-15497852
93
PIR_HUMAN
33-63
31
1
A:33-63
31
1.5
ENST00000380421
5
ENSE00000665884
X:15477863-15477780
84
PIR_HUMAN
64-91
28
1
A:64-91
28
1.6
ENST00000380421
6
ENSE00000665885
X:15474177-15473971
207
PIR_HUMAN
92-160
69
1
A:92-160
69
1.8
ENST00000380421
8
ENSE00001219767
X:15444113-15444029
85
PIR_HUMAN
161-189
29
1
A:161-189
29
1.9b
ENST00000380421
9b
ENSE00001206569
X:15425672-15425628
45
PIR_HUMAN
189-204
16
1
A:189-204
16
1.10
ENST00000380421
10
ENSE00001206562
X:15415653-15415571
83
PIR_HUMAN
204-231
28
1
A:204-231
28
1.11a
ENST00000380421
11a
ENSE00001091193
X:15408373-15408307
67
PIR_HUMAN
232-254
23
1
A:232-254
23
1.12
ENST00000380421
12
ENSE00001820668
X:15403238-15402921
318
PIR_HUMAN
254-290
37
1
A:254-290
37
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1j1la_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Pirin-like
(9)
Protein domain
:
Pirin
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1j1la_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1j1lA02 (A:14-139,A:247-283)
1b: CATH_1j1lA01 (A:3-13,A:140-246)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Human (Homo sapiens)
(1)
1a
1j1lA02
A:14-139,A:247-283
1b
1j1lA01
A:3-13,A:140-246
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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