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1IXR
Biol. Unit 1
Info
Asym.Unit (99 KB)
Biol.Unit 1 (362 KB)
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(1)
Title
:
RUVA-RUVB COMPLEX
Authors
:
K. Yamada, T. Miyata, D. Tsuchiya, T. Oyama, Y. Fujiwara, T. Ohnishi, H. Iwasaki, H. Shinagawa, M. Ariyoshi, K. Mayanagi, K. Morikawa
Date
:
04 Jul 02 (Deposition) - 06 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (4x)
Keywords
:
Heterooligomeric Complex, Octameric Ruva, Aaa-Atpase Domain, Complex With Nucleotide, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Yamada, T. Miyata, D. Tsuchiya, T. Oyama, Y. Fujiwara, T. Ohnishi, H. Iwasaki, H. Shinagawa, M. Ariyoshi, K. Mayanagi, K. Morikawa
Crystal Structure Of The Ruva-Ruvb Complex: A Structural Basis For The Holliday Junction Migrating Motor Machinery
Mol. Cell V. 10 671 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
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No.
Name
Count
Type
Full Name
1
ANP
4
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG C:7 , TYR C:14 , ILE C:15 , GLY C:48 , GLY C:50 , LYS C:51 , THR C:52 , THR C:53 , MET C:204 , ARG C:205 , LYS C:208
BINDING SITE FOR RESIDUE ANP C 313
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 7)
Info
All SCOP Domains
1a: SCOP_d1ixrc1 (C:243-312)
2a: SCOP_d1ixrb1 (B:139-191)
3a: SCOP_d1ixra1 (A:63-135)
3b: SCOP_d1ixrb2 (B:63-138)
4a: SCOP_d1ixra2 (A:1-62)
4b: SCOP_d1ixrb3 (B:1-62)
5a: SCOP_d1ixrc2 (C:5-242)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Helicase DNA-binding domain
(13)
Protein domain
:
Holliday junction helicase RuvB
(9)
Thermus thermophilus [TaxId: 274]
(3)
1a
d1ixrc1
C:243-312
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
DNA helicase RuvA subunit, C-terminal domain
(7)
Family
:
DNA helicase RuvA subunit, C-terminal domain
(7)
Protein domain
:
DNA helicase RuvA subunit, C-terminal domain
(7)
Thermus thermophilus [TaxId: 274]
(2)
2a
d1ixrb1
B:139-191
Fold
:
SAM domain-like
(639)
Superfamily
:
RuvA domain 2-like
(26)
Family
:
DNA helicase RuvA subunit, middle domain
(7)
Protein domain
:
DNA helicase RuvA subunit, middle domain
(7)
Thermus thermophilus [TaxId: 274]
(1)
3a
d1ixra1
A:63-135
3b
d1ixrb2
B:63-138
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
DNA helicase RuvA subunit, N-terminal domain
(7)
Protein domain
:
DNA helicase RuvA subunit, N-terminal domain
(7)
Thermus thermophilus [TaxId: 274]
(1)
4a
d1ixra2
A:1-62
4b
d1ixrb3
B:1-62
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
Holliday junction helicase RuvB
(9)
Thermus thermophilus [TaxId: 274]
(3)
5a
d1ixrc2
C:5-242
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CATH Domains
(6, 8)
Info
all CATH domains
1a: CATH_1ixrC01 (C:5-167)
2a: CATH_1ixrC03 (C:244-312)
3a: CATH_1ixrB02 (B:64-138)
3b: CATH_1ixrA02 (A:64-135)
4a: CATH_1ixrC02 (C:168-243)
5a: CATH_1ixrB03 (B:139-191)
6a: CATH_1ixrA01 (A:1-63)
6b: CATH_1ixrB01 (B:1-63)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus thermophilus. Organism_taxid: 274.
(12)
1a
1ixrC01
C:5-167
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Thermus thermophilus. Organism_taxid: 274.
(3)
2a
1ixrC03
C:244-312
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
Thermus thermophilus. Organism_taxid: 274.
(1)
3a
1ixrB02
B:64-138
3b
1ixrA02
A:64-135
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Thermus thermophilus. Organism_taxid: 274.
(8)
4a
1ixrC02
C:168-243
Homologous Superfamily
:
DNA helicase RuvA subunit, C-terminal domain
(65)
Thermus thermophilus. Organism_taxid: 274.
(2)
5a
1ixrB03
B:139-191
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Thermus thermophilus. Organism_taxid: 274.
(3)
6a
1ixrA01
A:1-63
6b
1ixrB01
B:1-63
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Pfam Domains
(0, 0)
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Asym.Unit (99 KB)
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