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Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
THERMOTOGA MARITIMA RUVB K64R MUTANT
Authors
:
C. D. Putnam, S. B. Clancy, H. Tsuruta, J. G. Wetmur, J. A. Tainer
Date
:
12 May 01 (Deposition) - 08 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aaa+-Class Atpase, Winged-Helix Domain, Holliday Junction, Branch Migration, Walker A, Walker B, Sensor 1, Sensor 2, Arginine Finger, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Putnam, S. B. Clancy, H. Tsuruta, S. Gonzalez, J. G. Wetmur, J. A. Tainer
Structure And Mechanism Of The Ruvb Holliday Junction Branch Migration Motor.
J. Mol. Biol. V. 311 297 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: COBALT (II) ION (COa)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
CO
1
Ligand/Ion
COBALT (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ACT A:601 , HOH A:766 , HOH A:883
BINDING SITE FOR RESIDUE CO A 600
2
AC2
SOFTWARE
GLY A:278 , LEU A:279 , GLY A:313 , ARG A:314 , CO A:600 , HOH A:766 , HOH A:883
BINDING SITE FOR RESIDUE ACT A 601
3
AC3
SOFTWARE
LEU A:19 , ARG A:20 , PRO A:21 , PHE A:27 , ILE A:28 , PRO A:60 , GLY A:61 , LEU A:62 , GLY A:63 , ARG A:64 , THR A:65 , THR A:66 , TYR A:180 , ILE A:188 , PRO A:216 , ARG A:217 , ILE A:220 , HOH A:711 , HOH A:713 , HOH A:715 , HOH A:729
BINDING SITE FOR RESIDUE ADP A 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1in6a1 (A:255-329)
2a: SCOP_d1in6a2 (A:17-254)
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Protein Domains
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Helicase DNA-binding domain
(13)
Protein domain
:
Holliday junction helicase RuvB
(9)
Thermotoga maritima [TaxId: 2336]
(6)
1a
d1in6a1
A:255-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
Holliday junction helicase RuvB
(9)
Thermotoga maritima [TaxId: 2336]
(6)
2a
d1in6a2
A:17-254
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1in6A01 (A:17-180)
2a: CATH_1in6A02 (A:256-328)
3a: CATH_1in6A03 (A:181-255)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermotoga maritima. Organism_taxid: 2336.
(16)
1a
1in6A01
A:17-180
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Thermotoga maritima. Organism_taxid: 2336.
(11)
2a
1in6A02
A:256-328
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Thermotoga maritima. Organism_taxid: 2336.
(8)
3a
1in6A03
A:181-255
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (57 KB)
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