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1IKY
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (319 KB)
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(1)
Title
:
HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH THE INHIBITOR MSC194
Authors
:
J. Lindberg, T. Unge
Date
:
07 May 01 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Heterodimer, Protein-Inhibitor Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lindberg, S. Sigurdsson, S. Lowgren, H. O. Andersson, C. Sahlberg, R. Noreen, K. Fridborg, H. Zhang, T. Unge
Structural Basis For The Inhibitory Efficacy Of Efavirenz (Dmp-266), Msc194 And Pnu142721 Towards The Hiv-1 Rt K103N Mutant.
Eur. J. Biochem. V. 269 1670 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-[2-(3-ACETYL-2-HYDROXY-6-METHOXY... (MSDa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSD
1
Ligand/Ion
1-[2-(3-ACETYL-2-HYDROXY-6-METHOXY-PHENYL)-CYCLOPROPYL]-3-(5-CYANO-PYRIDIN-2-YL)-THIOUREA
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:100 , LYS A:101 , ASN A:103 , VAL A:179 , TYR A:181 , TYR A:188 , PHE A:227 , TRP A:229 , LEU A:234 , HIS A:235 , PRO A:236 , TYR A:318 , GLU B:1138
BINDING SITE FOR RESIDUE MSD A 2000
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POL_HV1B1_004 (K451R, chain A, )
2: VAR_POL_HV1B1_005 (V458L, chain A, )
3: VAR_POL_HV1B1_006 (K512Q, chain A, )
4: VAR_POL_HV1B1_007 (E529Q, chain A, )
5: VAR_POL_HV1B1_003 (K1172R, chain A/A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
2
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
3
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
4
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
5
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A
A/B
K
172
1172
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:1044-1234)
2: RNASE_H (A:434-557)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:1044-1234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-557
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1ikya1 (A:430-557)
2a: SCOP_d1ikya2 (A:1-429)
2b: SCOP_d1ikyb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1ikya1
A:430-557
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1ikya2
A:1-429
2b
d1ikyb_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1ikyB02 (B:1094-1115,B:1157-1239)
1b: CATH_1ikyA04 (A:320-426)
1c: CATH_1ikyB04 (B:1322-1425)
1d: CATH_1ikyB03 (B:1240-1321)
1e: CATH_1ikyA02 (A:91-115,A:157-225)
1f: CATH_1ikyA03 (A:226-319)
2a: CATH_1ikyA05 (A:427-556)
3a: CATH_1ikyB01 (B:1005-1093,B:1116-1156)
3b: CATH_1ikyA01 (A:1-90,A:116-156)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(27)
1a
1ikyB02
B:1094-1115,B:1157-1239
1b
1ikyA04
A:320-426
1c
1ikyB04
B:1322-1425
1d
1ikyB03
B:1240-1321
1e
1ikyA02
A:91-115,A:157-225
1f
1ikyA03
A:226-319
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(29)
2a
1ikyA05
A:427-556
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(27)
3a
1ikyB01
B:1005-1093,B:1116-1156
3b
1ikyA01
A:1-90,A:116-156
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (319 KB)
Header - Biol.Unit 2
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