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1IK7
Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (11 KB)
Biol.Unit 2 (10 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE UNCOMPLEXED PELLE DEATH DOMAIN
Authors
:
T. Xiao, K. H. Gardner, S. R. Sprang
Date
:
02 May 01 (Deposition) - 31 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Single Helix, Mpd Crystallization, Structural Transition, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Xiao, K. H. Gardner, S. R. Sprang
Cosolvent-Induced Transformation Of A Death Domain Tertiary Structure
Proc. Natl. Acad. Sci. Usa V. 99 11151 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
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No.
Name
Count
Type
Full Name
1
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:86 , LYS A:127 , HOH B:11 , LYS B:107 , HIS B:111
BINDING SITE FOR RESIDUE TRS B 201
2
AC2
SOFTWARE
LYS A:127 , GLU B:123 , ASP B:124
BINDING SITE FOR RESIDUE TRS B 202
3
AC3
SOFTWARE
HOH A:6 , HOH A:13 , HIS A:111 , PHE B:86 , LYS B:127
BINDING SITE FOR RESIDUE TRS A 203
4
AC4
SOFTWARE
GLU A:123 , ASP A:124 , LYS B:127
BINDING SITE FOR RESIDUE TRS A 204
5
AC5
SOFTWARE
ILE A:129
BINDING SITE FOR RESIDUE MPD A 205
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ik7a_ (A:)
1b: SCOP_d1ik7b_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
DEATH domain
(37)
Superfamily
:
DEATH domain
(37)
Family
:
DEATH domain, DD
(18)
Protein domain
:
Pelle death domain
(3)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(3)
1a
d1ik7a_
A:
1b
d1ik7b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ik7A00 (A:78-129)
1b: CATH_1ik7B00 (B:81-129)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(1)
Fruit fly (Drosophila melanogaster)
(1)
1a
1ik7A00
A:78-129
1b
1ik7B00
B:81-129
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Pfam Domains
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Asym.Unit (24 KB)
Header - Asym.Unit
Biol.Unit 1 (11 KB)
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