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1IC1
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE FOR THE N-TERMINAL TWO DOMAINS OF ICAM-1
Authors
:
J. M. Casasnovas, T. Stehle, J. -H. Liu, J. -H. Wang, T. A. Springer
Date
:
09 Mar 98 (Deposition) - 17 Jun 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Icam-1, Immunoglobulin Fold, Cell Adhesion, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Casasnovas, T. Stehle, J. H. Liu, J. H. Wang, T. A. Springer
A Dimeric Crystal Structure For The N-Terminal Two Domains Of Intercellular Adhesion Molecule-1.
Proc. Natl. Acad. Sci. Usa V. 95 4134 1998
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:103 , THR A:145 , VAL A:146 , LEU A:147
BINDING SITE FOR RESIDUE NAG A 311
02
AC2
SOFTWARE
ALA A:117 , ASN A:118 , GLN A:168
BINDING SITE FOR RESIDUE NAG A 312
03
AC3
SOFTWARE
GLY A:126 , ALA A:155 , ASN A:156 , GLN A:181
BINDING SITE FOR RESIDUE NAG A 313
04
AC4
SOFTWARE
THR A:85 , PRO A:86 , GLU A:87 , GLU A:174 , ASN A:175 , NAG A:324
BINDING SITE FOR RESIDUE NAG A 314
05
AC5
SOFTWARE
THR A:85 , NAG A:314
BINDING SITE FOR RESIDUE NAG A 324
06
AC6
SOFTWARE
ASN B:103 , THR B:105 , THR B:143 , THR B:144 , THR B:145
BINDING SITE FOR RESIDUE NAG B 311
07
AC7
SOFTWARE
ALA B:117 , ASN B:118 , ASP B:164 , ARG B:166
BINDING SITE FOR RESIDUE NAG B 312
08
AC8
SOFTWARE
ASN B:156 , GLN B:181 , NAG B:323
BINDING SITE FOR RESIDUE NDG B 313
09
AC9
SOFTWARE
NDG B:313
BINDING SITE FOR RESIDUE NAG B 323
10
BC1
SOFTWARE
THR B:85 , PRO B:86 , GLU B:174 , ASN B:175 , NAG B:324
BINDING SITE FOR RESIDUE NAG B 314
11
BC2
SOFTWARE
TYR B:83 , TRP B:84 , THR B:85 , NAG B:314
BINDING SITE FOR RESIDUE NAG B 324
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049879 (S7C, chain A/B, )
2: VAR_010204 (K29M, chain A/B, )
3: VAR_014651 (K128N, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049879
S
34
C
ICAM1_HUMAN
Polymorphism
5491
A/B
S
7
C
2
UniProt
VAR_010204
K
56
M
ICAM1_HUMAN
Polymorphism
5491
A/B
K
29
M
3
UniProt
VAR_014651
K
155
N
ICAM1_HUMAN
Polymorphism
5492
A/B
K
128
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.2b (A:1-84 | B:1-84)
Exon 1.3a (A:84-186 | B:84-186)
Exon 1.4a (A:186-190 | B:186-190)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3a
3: Boundary 1.3a/1.4a
4: Boundary 1.4a/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264832
1
ENSE00001235328
chr19:
10381517-10381902
386
ICAM1_HUMAN
1-23
23
0
-
-
1.2b
ENST00000264832
2b
ENSE00000576130
chr19:
10385441-10385704
264
ICAM1_HUMAN
23-111
89
2
A:1-84
B:1-84
84
84
1.3a
ENST00000264832
3a
ENSE00000676100
chr19:
10394157-10394462
306
ICAM1_HUMAN
111-213
103
2
A:84-186
B:84-186
103
103
1.4a
ENST00000264832
4a
ENSE00000676102
chr19:
10394709-10394996
288
ICAM1_HUMAN
213-309
97
2
A:186-190
B:186-190
5
5
1.5
ENST00000264832
5
ENSE00000676105
chr19:
10395079-10395333
255
ICAM1_HUMAN
309-394
86
0
-
-
1.6a
ENST00000264832
6a
ENSE00000676106
chr19:
10395459-10395704
246
ICAM1_HUMAN
394-476
83
0
-
-
1.7b
ENST00000264832
7b
ENSE00000872752
chr19:
10395791-10397291
1501
ICAM1_HUMAN
476-532
57
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ic1a1 (A:83-190)
1b: SCOP_d1ic1b1 (B:83-190)
2a: SCOP_d1ic1a2 (A:1-82)
2b: SCOP_d1ic1b2 (B:1-82)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C2 set domains
(47)
Protein domain
:
Intercellular cell adhesion molecule-1 (ICAM-1)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1ic1a1
A:83-190
1b
d1ic1b1
B:83-190
Family
:
I set domains
(152)
Protein domain
:
Intercellular adhesion molecule-1, ICAM-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1ic1a2
A:1-82
2b
d1ic1b2
B:1-82
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ic1A02 (A:84-190)
1b: CATH_1ic1B02 (B:84-190)
1c: CATH_1ic1A01 (A:1-83)
1d: CATH_1ic1B01 (B:1-83)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ic1A02
A:84-190
1b
1ic1B02
B:84-190
1c
1ic1A01
A:1-83
1d
1ic1B01
B:1-83
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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