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Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (176 KB)
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Title
:
KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM
Authors
:
M. Kikkawa, E. P. Sablin, Y. Okada, H. Yajima, R. J. Fletterick, N. Hirok
Date
:
22 Mar 01 (Deposition) - 22 Mar 02 (Release) - 27 Apr 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
15.00
Chains
:
Asym. Unit : A,B,K
Biol. Unit 1: A,B,K (1x)
Keywords
:
Tubulin, Microtubule, Kif1A, Fitting Of X-Ray Structures Into Cryo-Em Reconstructions, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kikkawa, E. P. Sablin, Y. Okada, H. Yajima, R. J. Fletterick, N. Hirokawa
Switch-Based Mechanism Of Kinesin Motors
Nature V. 411 439 2001
(for further references see the
PDB file header
)
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
4a: MAGNESIUM ION (MGa)
5a: TAXOTERE (TXLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
TXL
1
Ligand/Ion
TAXOTERE
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER K:104 , ACP K:503
BINDING SITE FOR RESIDUE MG K 501
2
AC2
SOFTWARE
GLN A:11 , ALA A:12 , GLN A:15 , GLU A:71 , ALA A:100 , ASN A:101 , GLY A:143 , GLY A:144 , THR A:145 , ILE A:171 , SER A:178 , ASN A:206 , TYR A:224 , LEU A:227 , ASN A:228
BINDING SITE FOR RESIDUE GTP A 500
3
AC3
SOFTWARE
LEU A:248 , GLN B:11 , CYS B:12 , GLN B:15 , ILE B:16 , ASN B:101 , SER B:140 , GLY B:142 , GLY B:143 , GLY B:144 , THR B:145 , SER B:178 , TYR B:185 , ASN B:206 , TYR B:224
BINDING SITE FOR RESIDUE GDP B 501
4
AC4
SOFTWARE
VAL B:23 , ASP B:26 , LEU B:217 , ASP B:226 , HIS B:229 , SER B:236 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , ARG B:320 , PRO B:360 , ARG B:369 , GLY B:370 , LEU B:371
BINDING SITE FOR RESIDUE TXL B 502
5
AC5
SOFTWARE
ARG K:11 , ARG K:13 , PRO K:14 , SER K:58 , TYR K:67 , THR K:99 , GLY K:100 , ALA K:101 , GLY K:102 , LYS K:103 , SER K:104 , TYR K:105 , SER K:215 , MG K:501
BINDING SITE FOR RESIDUE ACP K 503
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TBB_PIG_001 (H37V, chain B, )
2: VAR_TBB_PIG_002 (N50S, chain B, )
3: VAR_TBA1A_PIG_001 (A265G, chain A, )
4: VAR_TBA1A_PIG_002 (A265I, chain A, )
5: VAR_TBA1A_PIG_003 (H266I, chain A, )
6: VAR_TBB_PIG_003 (S277A, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TBB_PIG_001
*
H
37
V
TBB_PIG
---
---
B
H
37
V
2
UniProt
VAR_TBB_PIG_002
*
N
48
S
TBB_PIG
---
---
B
N
50
S
3
UniProt
VAR_TBA1A_PIG_001
*
A
265
G
TBA1A_PIG
---
---
A
A
265
G
4
UniProt
VAR_TBA1A_PIG_002
*
A
265
I
TBA1A_PIG
---
---
A
A
265
I
5
UniProt
VAR_TBA1A_PIG_003
*
H
266
I
TBA1A_PIG
---
---
A
H
266
I
6
UniProt
VAR_TBB_PIG_003
*
S
275
A
TBB_PIG
---
---
B
S
277
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: TUBULIN_B_AUTOREG (B:1-4)
2: KINESIN_MOTOR_2 (K:5-354)
3: TUBULIN (B:142-148,A:142-148)
4: KINESIN_MOTOR_1 (K:242-253)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUBULIN_B_AUTOREG
PS00228
Tubulin-beta mRNA autoregulation signal.
TBB_PIG
1-4
1
B:1-4
2
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF1A_MOUSE
5-354
1
K:5-354
3
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB_PIG
140-146
1
B:142-148
TBA1A_PIG
142-148
1
A:142-148
4
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF1A_MOUSE
242-253
1
K:242-253
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ia0a_ (A:)
1b: SCOP_d1ia0b_ (B:)
1c: SCOP_d1ia0k_ (K:)
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Class
:
Low resolution protein structures
(283)
Fold
:
Microtubule complexes
(4)
Superfamily
:
Microtubule complexes
(4)
Family
:
Microtubule complexes
(4)
Protein domain
:
Kif1a head-microtubule complex
(1)
interspecies complex: Mus musculus and Sus scrofa
(1)
1a
d1ia0a_
A:
1b
d1ia0b_
B:
1c
d1ia0k_
K:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (182 KB)
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