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1I4T
Biol. Unit 1
Info
Asym.Unit (97 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF RAC1-GMPPNP IN COMPLEX WITH ARFAPTIN
Authors
:
C. Tarricone, B. Xiao, N. Justin, S. J. Gamblin, S. J. Smerdon
Date
:
23 Feb 01 (Deposition) - 16 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (1x)
Biol. Unit 2: A,B,D (1x)
Keywords
:
Signaling Protein, Complex, Coiled Coil, G-Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Tarricone, B. Xiao, N. Justin, P. A. Walker, K. Rittinger, S. J. Gamblin, S. J. Smerdon
The Structural Basis Of Arfaptin-Mediated Cross-Talk Between Rac And Arf Signalling Pathways.
Nature V. 411 215 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR D:17 , GNP D:1200
BINDING SITE FOR RESIDUE MG D 1201
2
AC2
SOFTWARE
GLY D:12 , ALA D:13 , VAL D:14 , GLY D:15 , LYS D:16 , THR D:17 , CYS D:18 , PHE D:28 , GLY D:60 , LYS D:116 , ASP D:118 , LEU D:119 , ALA D:159 , MG D:1201
BINDING SITE FOR RESIDUE GNP D 1200
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_014540 (N26D, chain D, )
02: VAR_014541 (F28L, chain D, )
03: VAR_014542 (A59T, chain D, )
04: VAR_014543 (D63G, chain D, )
05: VAR_014545 (V93G, chain D, )
06: VAR_014544 (V93I, chain D, )
07: VAR_014546 (T108I, chain D, )
08: VAR_014547 (K130R, chain D, )
09: VAR_014548 (K133E, chain D, )
10: VAR_033303 (T135I, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
D
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
D
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
D
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
D
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
D
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
D
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
D
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
D
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
D
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
D
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: AH (A:25-217)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AH
PS50870
Arfaptin homology (AH) domain profile.
ARFP2_HUMAN
121-321
1
A:25-217
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1i4ta_ (A:)
1b: SCOP_d1i4tb_ (B:)
2a: SCOP_d1i4td_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
BAR/IMD domain-like
(27)
Superfamily
:
BAR/IMD domain-like
(27)
Family
:
Arfaptin, Rac-binding fragment
(5)
Protein domain
:
Arfaptin, Rac-binding fragment
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1i4ta_
A:
1b
d1i4tb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d1i4td_
D:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1i4tD00 (D:2-178)
2a: CATH_1i4tA00 (A:23-217)
2b: CATH_1i4tB00 (B:26-223)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1i4tD00
D:2-178
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
Arfaptin, Rac-binding fragment, chain A
(5)
Human (Homo sapiens)
(4)
2a
1i4tA00
A:23-217
2b
1i4tB00
B:26-223
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (97 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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