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1I27
Asym. Unit
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Asym.Unit (36 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE RAP74 SUBUNIT OF HUMAN TRANSCRIPTION FACTOR IIF (TFIIF)
Authors
:
K. Kamada, J. De Angelis, R. G. Roeder, S. K. Burley
Date
:
07 Feb 01 (Deposition) - 07 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.02
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
General Transcription Factor, Rap74, Rap30, Tfiif, Rna Polymerase Ii, Winged-Helix Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kamada, J. De Angelis, R. G. Roeder, S. K. Burley
Crystal Structure Of The C-Terminal Domain Of The Rap74 Subunit Of Human Transcription Factor Iif.
Proc. Natl. Acad. Sci. Usa V. 98 3115 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:503 , HIS A:512 , GLU A:517 , HOH A:1001
BINDING SITE FOR RESIDUE ZN A 999
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(2, 2)
Info
All Exons
Exon 1.12 (A:445-450 (gaps))
Exon 1.13 (A:450-517)
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All Exon Boundaries
1: Boundary 1.11/1.12
2: Boundary 1.12/1.13
3: Boundary 1.13/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000394456
1
ENSE00002168237
chr19:
6393291-6392995
297
T2FA_HUMAN
1-4
4
0
-
-
1.2
ENST00000394456
2
ENSE00001664061
chr19:
6392914-6392868
47
T2FA_HUMAN
5-20
16
0
-
-
1.3
ENST00000394456
3
ENSE00001720340
chr19:
6391985-6391913
73
T2FA_HUMAN
20-44
25
0
-
-
1.4
ENST00000394456
4
ENSE00000666056
chr19:
6389648-6389455
194
T2FA_HUMAN
45-109
65
0
-
-
1.5
ENST00000394456
5
ENSE00000666058
chr19:
6387570-6387400
171
T2FA_HUMAN
109-166
58
0
-
-
1.6
ENST00000394456
6
ENSE00000666060
chr19:
6383506-6383322
185
T2FA_HUMAN
166-228
63
0
-
-
1.7
ENST00000394456
7
ENSE00001060029
chr19:
6381861-6381708
154
T2FA_HUMAN
228-279
52
0
-
-
1.8
ENST00000394456
8
ENSE00001060032
chr19:
6381626-6381565
62
T2FA_HUMAN
279-300
22
0
-
-
1.9
ENST00000394456
9
ENSE00001060028
chr19:
6381489-6381370
120
T2FA_HUMAN
300-340
41
0
-
-
1.10
ENST00000394456
10
ENSE00000666066
chr19:
6381206-6381133
74
T2FA_HUMAN
340-364
25
0
-
-
1.11
ENST00000394456
11
ENSE00000666068
chr19:
6381053-6380915
139
T2FA_HUMAN
365-411
47
0
-
-
1.12
ENST00000394456
12
ENSE00000666070
chr19:
6380701-6380584
118
T2FA_HUMAN
411-450
40
1
A:445-450 (gaps)
23
1.13
ENST00000394456
13
ENSE00001518517
chr19:
6380496-6379580
917
T2FA_HUMAN
450-517
68
1
A:450-517
68
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1i27a_ (A:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
C-terminal domain of the rap74 subunit of TFIIF
(4)
Protein domain
:
C-terminal domain of the rap74 subunit of TFIIF
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1i27a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1i27A00 (A:445-517)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Human (Homo sapiens)
(70)
1a
1i27A00
A:445-517
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Pfam Domains
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Chain A
Asymmetric Unit 1
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