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1HZF
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
C4ADG FRAGMENT OF HUMAN COMPLEMENT FACTOR C4A
Authors
:
J. M. H. Van Den Elsen, A. Martin, V. Wong, L. Clemenza, D. R. Rose, D. E. Isenman
Date
:
24 Jan 01 (Deposition) - 09 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Alpha 6 Barrel, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Van Den Elsen, A. Martin, V. Wong, L. Clemenza, D. R. Rose, D. E. Isenman
X-Ray Crystal Structure Of The C4D Fragment Of Human Complement Component C4.
J. Mol. Biol. V. 322 1103 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_023731 (D1054D, chain A, )
02: VAR_069158 (D1054G, chain A, )
03: VAR_023732 (S1157N, chain A, )
04: VAR_069159 (S1157S, chain A, )
05: VAR_001992 (T1182S, chain A, )
06: VAR_001993 (A1188A, chain A, )
07: VAR_023734 (A1188V, chain A, )
08: VAR_023735 (R1191L, chain A, )
09: VAR_001994 (R1191R, chain A, )
10: VAR_001995 (S1267A, chain A, )
11: VAR_069161 (I1298F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023731
G
1073
D
CO4B_HUMAN
Polymorphism
---
A
D
1054
D
02
UniProt
VAR_069158
D
1073
G
CO4A_HUMAN
Polymorphism
147162052
A
D
1054
G
03
UniProt
VAR_023732
S
1176
N
CO4B_HUMAN
Polymorphism
2746414
A
S
1157
N
04
UniProt
VAR_069159
N
1176
S
CO4A_HUMAN
Polymorphism
17874654
A
S
1157
S
05
UniProt
VAR_001992
T
1201
S
CO4A_HUMAN
Polymorphism
---
A
T
1182
S
06
UniProt
VAR_001993
V
1207
A
CO4A_HUMAN
Polymorphism
28357075
A
A
1188
A
07
UniProt
VAR_023734
A
1207
V
CO4B_HUMAN
Polymorphism
200888163
A
A
1188
V
08
UniProt
VAR_023735
R
1210
L
CO4B_HUMAN
Polymorphism
112683215
A
R
1191
L
09
UniProt
VAR_001994
L
1210
R
CO4A_HUMAN
Polymorphism
28357076
A
R
1191
R
10
UniProt
VAR_001995
S
1286
A
CO4A_HUMAN
Polymorphism
201016130
A
S
1267
A
11
UniProt
VAR_069161
I
1317
F
CO4B_HUMAN
Polymorphism
---
A
I
1298
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ALPHA_2_MACROGLOBULIN (A:988-996,A:988-996)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO4A_HUMAN
1007-1015
1
A:988-996
CO4B_HUMAN
1007-1015
1
A:988-996
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.123a (A:977-1033)
Exon 1.124 (A:1033-1058)
Exon 1.125 (A:1058-1110)
Exon 1.126 (A:1111-1149)
Exon 1.127 (A:1150-1207)
Exon 1.128a (A:1207-1284 (gaps))
Exon 1.129 (A:1285-1302)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.122a/1.123a
2: Boundary 1.123a/1.124
3: Boundary 1.124/1.125
4: Boundary 1.125/1.126
5: Boundary 1.126/1.127
6: Boundary 1.127/1.128a
7: Boundary 1.128a/1.129
8: Boundary 1.129/1.130a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.98
ENST00000375177
98
ENSE00001679291
HSCHR6_MHC_SSTO:31974391-31974539
149
CO4B_HUMAN
1-22
22
0
-
-
1.99
ENST00000375177
99
ENSE00001592227
HSCHR6_MHC_SSTO:31974672-31974870
199
CO4B_HUMAN
22-88
67
0
-
-
1.100a
ENST00000375177
100a
ENSE00001633686
HSCHR6_MHC_SSTO:31975085-31975286
202
CO4B_HUMAN
89-156
68
0
-
-
1.101d
ENST00000375177
101d
ENSE00001649954
HSCHR6_MHC_SSTO:31975496-31975566
71
CO4B_HUMAN
156-179
24
0
-
-
1.101h
ENST00000375177
101h
ENSE00001732960
HSCHR6_MHC_SSTO:31975645-31975733
89
CO4B_HUMAN
180-209
30
0
-
-
1.101k
ENST00000375177
101k
ENSE00001752127
HSCHR6_MHC_SSTO:31975952-31976034
83
CO4B_HUMAN
209-237
29
0
-
-
1.102
ENST00000375177
102
ENSE00001621592
HSCHR6_MHC_SSTO:31976205-31976301
97
CO4B_HUMAN
237-269
33
0
-
-
1.103
ENST00000375177
103
ENSE00001764129
HSCHR6_MHC_SSTO:31976440-31976545
106
CO4B_HUMAN
269-304
36
0
-
-
1.104b
ENST00000375177
104b
ENSE00001691554
HSCHR6_MHC_SSTO:31976643-31976775
133
CO4B_HUMAN
305-349
45
0
-
-
1.111a
ENST00000375177
111a
ENSE00001783823
HSCHR6_MHC_SSTO:31983559-31983674
116
CO4B_HUMAN
349-387
39
0
-
-
1.111d
ENST00000375177
111d
ENSE00001675664
HSCHR6_MHC_SSTO:31983774-31983953
180
CO4B_HUMAN
388-447
60
0
-
-
1.112a
ENST00000375177
112a
ENSE00001679195
HSCHR6_MHC_SSTO:31984099-31984281
183
CO4B_HUMAN
448-508
61
0
-
-
1.113b
ENST00000375177
113b
ENSE00001645785
HSCHR6_MHC_SSTO:31984414-31984599
186
CO4B_HUMAN
509-570
62
0
-
-
1.114a
ENST00000375177
114a
ENSE00001759651
HSCHR6_MHC_SSTO:31984753-31984911
159
CO4B_HUMAN
571-623
53
0
-
-
1.115
ENST00000375177
115
ENSE00001728536
HSCHR6_MHC_SSTO:31985163-31985289
127
CO4B_HUMAN
624-666
43
0
-
-
1.116
ENST00000375177
116
ENSE00001774812
HSCHR6_MHC_SSTO:31985457-31985531
75
CO4B_HUMAN
666-691
26
0
-
-
1.117
ENST00000375177
117
ENSE00001746718
HSCHR6_MHC_SSTO:31985792-31985989
198
CO4B_HUMAN
691-757
67
0
-
-
1.118a
ENST00000375177
118a
ENSE00001723324
HSCHR6_MHC_SSTO:31986081-31986192
112
CO4B_HUMAN
757-794
38
0
-
-
1.118c
ENST00000375177
118c
ENSE00001639698
HSCHR6_MHC_SSTO:31986283-31986353
71
CO4B_HUMAN
794-818
25
0
-
-
1.119
ENST00000375177
119
ENSE00001691898
HSCHR6_MHC_SSTO:31986612-31986751
140
CO4B_HUMAN
818-864
47
0
-
-
1.120
ENST00000375177
120
ENSE00001611231
HSCHR6_MHC_SSTO:31986865-31987074
210
CO4B_HUMAN
865-934
70
0
-
-
1.121
ENST00000375177
121
ENSE00001721488
HSCHR6_MHC_SSTO:31987319-31987370
52
CO4B_HUMAN
935-952
18
0
-
-
1.122a
ENST00000375177
122a
ENSE00001718751
HSCHR6_MHC_SSTO:31987472-31987561
90
CO4B_HUMAN
952-982
31
0
-
-
1.123a
ENST00000375177
123a
ENSE00001623042
HSCHR6_MHC_SSTO:31987697-31987906
210
CO4B_HUMAN
982-1052
71
1
A:977-1033
57
1.124
ENST00000375177
124
ENSE00001608111
HSCHR6_MHC_SSTO:31988086-31988161
76
CO4B_HUMAN
1052-1077
26
1
A:1033-1058
26
1.125
ENST00000375177
125
ENSE00001649318
HSCHR6_MHC_SSTO:31988322-31988478
157
CO4B_HUMAN
1077-1129
53
1
A:1058-1110
53
1.126
ENST00000375177
126
ENSE00001674847
HSCHR6_MHC_SSTO:31988574-31988690
117
CO4B_HUMAN
1130-1168
39
1
A:1111-1149
39
1.127
ENST00000375177
127
ENSE00001649290
HSCHR6_MHC_SSTO:31988796-31988967
172
CO4B_HUMAN
1169-1226
58
1
A:1150-1207
58
1.128a
ENST00000375177
128a
ENSE00001605574
HSCHR6_MHC_SSTO:31989196-31989428
233
CO4B_HUMAN
1226-1303
78
1
A:1207-1284 (gaps)
78
1.129
ENST00000375177
129
ENSE00001767709
HSCHR6_MHC_SSTO:31989511-31989678
168
CO4B_HUMAN
1304-1359
56
1
A:1285-1302
18
1.130a
ENST00000375177
130a
ENSE00001601867
HSCHR6_MHC_SSTO:31990072-31990131
60
CO4B_HUMAN
1360-1379
20
0
-
-
1.131b
ENST00000375177
131b
ENSE00001709807
HSCHR6_MHC_SSTO:31991181-31991274
94
CO4B_HUMAN
1380-1411
32
0
-
-
1.132a
ENST00000375177
132a
ENSE00001732532
HSCHR6_MHC_SSTO:31991372-31991558
187
CO4B_HUMAN
1411-1473
63
0
-
-
1.132e
ENST00000375177
132e
ENSE00001662923
HSCHR6_MHC_SSTO:31991673-31991763
91
CO4B_HUMAN
1473-1503
31
0
-
-
1.132g
ENST00000375177
132g
ENSE00001794518
HSCHR6_MHC_SSTO:31991854-31991928
75
CO4B_HUMAN
1504-1528
25
0
-
-
1.136c
ENST00000375177
136c
ENSE00001595537
HSCHR6_MHC_SSTO:31993420-31993522
103
CO4B_HUMAN
1529-1563
35
0
-
-
1.137c
ENST00000375177
137c
ENSE00001783972
HSCHR6_MHC_SSTO:31993688-31993777
90
CO4B_HUMAN
1563-1593
31
0
-
-
1.137e
ENST00000375177
137e
ENSE00001661549
HSCHR6_MHC_SSTO:31993863-31993961
99
CO4B_HUMAN
1593-1626
34
0
-
-
1.137h
ENST00000375177
137h
ENSE00001778876
HSCHR6_MHC_SSTO:31994144-31994227
84
CO4B_HUMAN
1626-1654
29
0
-
-
1.137m
ENST00000375177
137m
ENSE00001727043
HSCHR6_MHC_SSTO:31994490-31994622
133
CO4B_HUMAN
1654-1698
45
0
-
-
1.138b
ENST00000375177
138b
ENSE00001868594
HSCHR6_MHC_SSTO:31994766-31995048
283
CO4B_HUMAN
1698-1744
47
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hzfa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
C4adg fragment of complement factor C4a
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1hzfa_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hzfA00 (A:977-1302)
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Organisms
(
)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Human (Homo sapiens)
(23)
1a
1hzfA00
A:977-1302
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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