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1HYS
Asym. Unit
Info
Asym.Unit (253 KB)
Biol.Unit 1 (245 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA
Authors
:
S. G. Sarafianos, K. Das, C. Tantillo, A. D. Clark Jr. , J. Ding, J. Whitcomb, P. L. Boyer, S. H. Hughes, E. Arnold
Date
:
22 Jan 01 (Deposition) - 26 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Polypurine Tract, Ppt, Protein-Nucleic Acid Complex, Rnase H, Rna:Dna, Unpaired Base, Rnase H Primer Grip, Transferase/Dna/Rna Complex, Transferase/Dna-Rna Hybrid Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Sarafianos, K. Das, C. Tantillo, A. D. Clark Jr. , J. Ding, J. M. Whitcomb, P. L. Boyer, S. H. Hughes, E. Arnold
Crystal Structure Of Hiv-1 Reverse Transcriptase In Complex With A Polypurine Tract Rna:Dna.
Embo J. V. 20 1449 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-553)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-553
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 7)
Info
All SCOP Domains
1a: SCOP_d1hysd2 (D:124-220)
2a: SCOP_d1hysc2 (C:108-214)
3a: SCOP_d1hysd1 (D:1-123)
4a: SCOP_d1hysc1 (C:1-107)
5a: SCOP_d1hysa1 (A:430-553)
6a: SCOP_d1hysa2 (A:1-429)
6b: SCOP_d1hysb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1hysd2
D:124-220
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1hysc2
C:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 6 [TaxId: 10090]
(12)
3a
d1hysd1
D:1-123
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1hysc1
C:1-107
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
5a
d1hysa1
A:430-553
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
6a
d1hysa2
A:1-429
6b
d1hysb_
B:
[
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CATH Domains
(4, 13)
Info
all CATH domains
1a: CATH_1hysB02 (B:91-115,B:157-235)
1b: CATH_1hysA02 (A:91-115,A:157-225)
1c: CATH_1hysA03 (A:226-319)
1d: CATH_1hysB03 (B:236-312)
1e: CATH_1hysA04 (A:320-426)
1f: CATH_1hysB04 (B:313-417)
2a: CATH_1hysA05 (A:427-553)
3a: CATH_1hysA01 (A:1-90,A:116-156)
3b: CATH_1hysB01 (B:1-90,B:116-156)
4a: CATH_1hysC02 (C:108-211)
4b: CATH_1hysD01 (D:1-123)
4c: CATH_1hysC01 (C:1-107)
4d: CATH_1hysD02 (D:124-220)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
[unclassified]
(58)
1a
1hysB02
B:91-115,B:157-235
1b
1hysA02
A:91-115,A:157-225
1c
1hysA03
A:226-319
1d
1hysB03
B:236-312
1e
1hysA04
A:320-426
1f
1hysB04
B:313-417
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
[unclassified]
(102)
2a
1hysA05
A:427-553
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
[unclassified]
(24)
3a
1hysA01
A:1-90,A:116-156
3b
1hysB01
B:1-90,B:116-156
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
4a
1hysC02
C:108-211
4b
1hysD01
D:1-123
4c
1hysC01
C:1-107
4d
1hysD02
D:124-220
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (253 KB)
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