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1HE1
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GAP DOMAIN OF THE PSEUDOMONAS AERUGINOSA EXOS TOXIN AND HUMAN RAC
Authors
:
M. Wurtele, E. Wolf, K. J. Pederson, G. Buchwald, M. R. Ahmadian, J. T. Barbieri, A. Wittinghofer
Date
:
18 Nov 00 (Deposition) - 02 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Signaling Protein, Signalling Complex, Exos, Rac, Pseudomonas Aeruginosa, Gap, Toxin, Virulence Factor, Transition State, Protein-Protein Complex, Gtpase, Signal Transduction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wurtele, E. Wolf, K. J. Pederson, G. Buchwald, M. R. Ahmadian, J. T. Barbieri, A. Wittinghofer
How The Pseudomonas Aeruginosa Exos Toxin Downregulates Rac
Nat. Struct. Biol. V. 8 23 2001
[
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ALUMINUM FLUORIDE (AF3a)
1b: ALUMINUM FLUORIDE (AF3b)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AF3
2
Ligand/Ion
ALUMINUM FLUORIDE
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NI
4
Ligand/Ion
NICKEL (II) ION
[
close Hetero Component info
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:211 , HOH A:2067 , HOH A:2115 , HOH A:2117 , HOH C:2023 , HOH C:2025
BINDING SITE FOR RESIDUE NI A 230
02
AC2
SOFTWARE
THR C:17 , THR C:35 , GDP C:200 , AF3 C:201 , HOH C:2047 , HOH C:2224
BINDING SITE FOR RESIDUE MG C 202
03
AC3
SOFTWARE
HIS C:103 , HOH C:2092
BINDING SITE FOR RESIDUE NI C 203
04
AC4
SOFTWARE
ASP C:76 , ASP D:76
BINDING SITE FOR RESIDUE NI C 204
05
AC5
SOFTWARE
THR D:17 , THR D:35 , GDP D:200 , AF3 D:201 , HOH D:2046 , HOH D:2224
BINDING SITE FOR RESIDUE MG D 202
06
AC6
SOFTWARE
HIS D:103 , HOH D:2091 , HOH D:2092 , HOH D:2093 , HOH D:2143
BINDING SITE FOR RESIDUE NI D 203
07
AC7
SOFTWARE
ARG A:146 , THR A:186 , THR A:187 , GLY A:188 , HOH A:2094 , ALA C:13 , VAL C:14 , GLY C:15 , LYS C:16 , THR C:17 , CYS C:18 , TYR C:32 , LYS C:116 , ASP C:118 , LEU C:119 , SER C:158 , ALA C:159 , LEU C:160 , AF3 C:201 , MG C:202 , HOH C:2006 , HOH C:2047 , HOH C:2224 , HOH C:2225 , HOH C:2226 , HOH C:2227 , HOH C:2228
BINDING SITE FOR RESIDUE GDP C 200
08
AC8
SOFTWARE
ARG A:146 , GLY C:12 , ALA C:13 , LYS C:16 , THR C:35 , THR C:58 , ALA C:59 , GLY C:60 , GLN C:61 , GDP C:200 , MG C:202 , HOH C:2026 , HOH C:2047 , HOH C:2050 , HOH C:2224
BINDING SITE FOR RESIDUE AF3 C 201
09
AC9
SOFTWARE
ARG B:146 , THR B:186 , THR B:187 , GLY B:188 , ALA D:13 , VAL D:14 , GLY D:15 , LYS D:16 , THR D:17 , CYS D:18 , TYR D:32 , LYS D:116 , ASP D:118 , LEU D:119 , SER D:158 , ALA D:159 , LEU D:160 , AF3 D:201 , MG D:202 , HOH D:2046 , HOH D:2221 , HOH D:2223 , HOH D:2224 , HOH D:2225 , HOH D:2226
BINDING SITE FOR RESIDUE GDP D 200
10
BC1
SOFTWARE
ARG B:146 , GLY D:12 , ALA D:13 , LYS D:16 , THR D:35 , GLY D:60 , GLN D:61 , GDP D:200 , MG D:202 , HOH D:2025 , HOH D:2046 , HOH D:2049 , HOH D:2224
BINDING SITE FOR RESIDUE AF3 D 201
[
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SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014540 (N26D, chain C/D, )
02: VAR_014541 (F28L, chain C/D, )
03: VAR_014542 (A59T, chain C/D, )
04: VAR_014543 (D63G, chain C/D, )
05: VAR_014545 (V93G, chain C/D, )
06: VAR_014544 (V93I, chain C/D, )
07: VAR_014546 (T108I, chain C/D, )
08: VAR_014547 (K130R, chain C/D, )
09: VAR_014548 (K133E, chain C/D, )
10: VAR_033303 (T135I, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
C/D
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
C/D
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
C/D
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
C/D
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
C/D
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
C/D
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
C/D
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
C/D
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
C/D
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
C/D
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (C:2-176,D:2-176,C:2-176,D:2-176,C:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_BOVIN
1-176
2
C:2-176
D:2-176
RAC1_CANLF
1-176
2
C:2-176
D:2-176
RAC1_HUMAN
1-176
2
C:2-176
D:2-176
RAC1_MOUSE
1-176
2
C:2-176
D:2-176
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1he1a_ (A:)
1b: SCOP_d1he1b_ (B:)
2a: SCOP_d1he1c_ (C:)
2b: SCOP_d1he1d_ (D:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Bacterial GAP domain
(6)
Family
:
Bacterial GAP domain
(6)
Protein domain
:
ExoS toxin
(2)
Pseudomonas aeruginosa [TaxId: 287]
(2)
1a
d1he1a_
A:
1b
d1he1b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d1he1c_
C:
2b
d1he1d_
D:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1he1C00 (C:1-176)
1b: CATH_1he1D00 (D:1-176)
2a: CATH_1he1A00 (A:95-229)
2b: CATH_1he1B00 (B:95-229)
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Classes
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Pseudomonas aeruginosa. Organism_taxid: 287.
(4)
1a
1he1C00
C:1-176
1b
1he1D00
D:1-176
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.260, no name defined]
(6)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
2a
1he1A00
A:95-229
2b
1he1B00
B:95-229
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT PROSITE
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Chain C
Chain D
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