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1HC7
Asym. Unit
Info
Asym.Unit (323 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (162 KB)
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(1)
Title
:
PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Authors
:
A. Yaremchuk, M. Tukalo, S. Cusack
Date
:
26 Apr 01 (Deposition) - 18 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.43
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Aminoacyl-Trna Synthetase, Atp + L-Proline + Trna(Pro) Amp + Ppi + L-Prolyl-Trna(Pro), Class Ii Aminoacyl-Trna Synthetase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Yaremchuk, M. Tukalo, M. Grotli, S. Cusack
A Succession Of Substrate Induced Conformational Changes Ensures The Amino Acid Specificity Of Thermus Thermophilus Prolyl-Trna Synthetase: Comparison With Histidyl-Trna Synthetase
J. Mol. Biol. V. 309 989 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:427 , CYS A:432 , CYS A:458 , CYS A:461
BINDING SITE FOR RESIDUE ZN A 490
2
AC2
SOFTWARE
CYS B:427 , CYS B:432 , CYS B:458 , CYS B:461
BINDING SITE FOR RESIDUE ZN B 490
3
AC3
SOFTWARE
CYS C:427 , CYS C:432 , CYS C:458 , CYS C:461
BINDING SITE FOR RESIDUE ZN C 490
4
AC4
SOFTWARE
CYS D:427 , CYS D:432 , CYS D:458 , CYS D:461
BINDING SITE FOR RESIDUE ZN D 490
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1hc7a2 (A:5-276)
1b: SCOP_d1hc7b2 (B:5-276)
1c: SCOP_d1hc7c2 (C:5-276)
1d: SCOP_d1hc7d2 (D:5-276)
2a: SCOP_d1hc7a3 (A:404-477)
2b: SCOP_d1hc7b3 (B:404-477)
2c: SCOP_d1hc7c3 (C:404-477)
2d: SCOP_d1hc7d3 (D:404-477)
3a: SCOP_d1hc7a1 (A:277-403)
3b: SCOP_d1hc7b1 (B:277-403)
3c: SCOP_d1hc7c1 (C:277-403)
3d: SCOP_d1hc7d1 (D:277-403)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Prolyl-tRNA synthetase (ProRS)
(9)
Thermus thermophilus [TaxId: 274]
(4)
1a
d1hc7a2
A:5-276
1b
d1hc7b2
B:5-276
1c
d1hc7c2
C:5-276
1d
d1hc7d2
D:5-276
Fold
:
IF3-like
(127)
Superfamily
:
C-terminal domain of ProRS
(9)
Family
:
C-terminal domain of ProRS
(9)
Protein domain
:
C-terminal domain of ProRS
(9)
Thermus thermophilus [TaxId: 274]
(4)
2a
d1hc7a3
A:404-477
2b
d1hc7b3
B:404-477
2c
d1hc7c3
C:404-477
2d
d1hc7d3
D:404-477
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
Class II aaRS ABD-related
(40)
Family
:
Anticodon-binding domain of Class II aaRS
(33)
Protein domain
:
Prolyl-tRNA synthetase (ProRS) domain
(9)
Thermus thermophilus [TaxId: 274]
(4)
3a
d1hc7a1
A:277-403
3b
d1hc7b1
B:277-403
3c
d1hc7c1
C:277-403
3d
d1hc7d1
D:277-403
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1hc7A01 (A:5-282)
1b: CATH_1hc7B01 (B:5-282)
1c: CATH_1hc7C01 (C:5-282)
1d: CATH_1hc7D01 (D:5-282)
2a: CATH_1hc7B03 (B:404-476)
2b: CATH_1hc7C03 (C:404-476)
2c: CATH_1hc7D03 (D:404-476)
2d: CATH_1hc7A03 (A:404-477)
3a: CATH_1hc7A02 (A:283-386)
3b: CATH_1hc7B02 (B:283-386)
3c: CATH_1hc7C02 (C:283-386)
3d: CATH_1hc7D02 (D:283-386)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Thermus thermophilus. Organism_taxid: 274. Strain: hb-8.
(4)
1a
1hc7A01
A:5-282
1b
1hc7B01
B:5-282
1c
1hc7C01
C:5-282
1d
1hc7D01
D:5-282
Topology
:
Translation Initiation Factor IF3
(34)
Homologous Superfamily
:
[code=3.30.110.30, no name defined]
(9)
Thermus thermophilus. Organism_taxid: 274. Strain: hb-8.
(4)
2a
1hc7B03
B:404-476
2b
1hc7C03
C:404-476
2c
1hc7D03
D:404-476
2d
1hc7A03
A:404-477
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Thermus thermophilus. Organism_taxid: 274. Strain: hb-8.
(4)
3a
1hc7A02
A:283-386
3b
1hc7B02
B:283-386
3c
1hc7C02
C:283-386
3d
1hc7D02
D:283-386
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (323 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (162 KB)
Header - Biol.Unit 2
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