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1HC0
Biol. Unit 1
Info
Asym.Unit (250 KB)
Biol.Unit 1 (26 KB)
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Models
(10 )
Title
:
STRUCTURE OF LYSOZYME WITH PERIODATE
Authors
:
J. Ondracek, F. Jursik, J. Brynda, P. Rezacova, J. Sedlacek
Date
:
25 Apr 01 (Deposition) - 14 Nov 05 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A (10 x)
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycosidase, Bacteriolytic Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ondracek, M. S. Weiss, J. Brynda, J. Fiala, F. Jursik, P. Rezacova, L. B. Jenner, J. Sedlacek
Regular Arrangement Of Periodates Bound To Lysozyme.
Acta Crystallogr. , Sect. D V. 61 1181 2005
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
IOD
10
Ligand/Ion
IODIDE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:89 , HOH A:1136 , HOH A:1196
BINDING SITE FOR RESIDUE IOD A 137
02
AC2
SOFTWARE
THR A:69 , HOH A:2131 , HOH A:2132
BINDING SITE FOR RESIDUE IOD A 138
03
AC3
SOFTWARE
IOD A:132 , HOH A:1181 , HOH A:4131 , HOH A:4133 , HOH A:4134 , HOH A:4135 , HOH A:4136
BINDING SITE FOR RESIDUE IOD A 130
04
AC4
SOFTWARE
ARG A:128 , HOH A:3131 , HOH A:3132 , HOH A:3133 , HOH A:3134 , HOH A:3135 , HOH A:3136
BINDING SITE FOR RESIDUE IOD A 131
05
AC5
SOFTWARE
ARG A:14 , IOD A:130 , HOH A:4131 , HOH A:4132 , HOH A:4133 , HOH A:4134 , HOH A:4135 , HOH A:4136
BINDING SITE FOR RESIDUE IOD A 132
06
AC6
SOFTWARE
HOH A:5131 , HOH A:5132 , HOH A:5133 , HOH A:5134 , HOH A:5135 , HOH A:5136
BINDING SITE FOR RESIDUE IOD A 133
07
AC7
SOFTWARE
GLU A:35 , ASP A:52 , HOH A:6131 , HOH A:6132 , HOH A:6133 , HOH A:6134 , HOH A:6135 , HOH A:6136
BINDING SITE FOR RESIDUE IOD A 134
08
AC8
SOFTWARE
HOH A:7131 , HOH A:7132 , HOH A:7133 , HOH A:7134 , HOH A:7135 , HOH A:7136
BINDING SITE FOR RESIDUE IOD A 135
09
AC9
SOFTWARE
SER A:86 , HOH A:8131 , HOH A:8132 , HOH A:8133
BINDING SITE FOR RESIDUE IOD A 136
10
BC1
SOFTWARE
HOH A:1029
BINDING SITE FOR RESIDUE IOD A 139
11
BC2
SOFTWARE
HOH A:1148
BINDING SITE FOR RESIDUE CL A 140
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hc0a_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d1hc0a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hc0A00 (A:1-129)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Chicken (Gallus gallus)
(228)
1a
1hc0A00
A:1-129
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein & NOT Variant
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Chain A
Asymmetric Unit 1
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