PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1H29
Asym. Unit
Info
Asym.Unit (409 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (101 KB)
Biol.Unit 3 (103 KB)
Biol.Unit 4 (100 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SULFATE RESPIRATION IN DESULFOVIBRIO VULGARIS HILDENBOROUGH: STRUCTURE OF THE 16-HEME CYTOCHROME C HMCA AT 2.5 A RESOLUTION AND A VIEW OF ITS ROLE IN TRANSMEMBRANE ELECTRON TRANSFER
Authors
:
P. M. Matias, A. V. Coelho, F. M. A. Valente, D. Placido, J. Legall, A. V. Xavier, I. A. C. Pereira, M. A. Carrondo
Date
:
01 Aug 02 (Deposition) - 02 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Electron Transport, High Molecular Mass Cytochrome, Sulfate Respiration, Hydrogen Cycle, Transmembrane Redox Complex, Energy Conservation, Proton Gradient, Tetra-Heme, C3-Like Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Matias, A. V. Coelho, F. M. A. Valente, D. Placido, J. Legall, A. V. Xavier, I. A. C. Pereira, M. A. Carrondo
Sulfate Respiration In Desulfovibrio Vulgaris Hildenborough: Structure Of The 16-Heme Cytochrome C Hmca At 2. 5 A Resolution And A View Of Its Role In Transmembrane Electron Transfer
J. Biol. Chem. V. 277 47907 2002
[
close entry info
]
Hetero Components
(1, 64)
Info
All Hetero Components
1a: HEME C (HECa)
1aa: HEME C (HECaa)
1ab: HEME C (HECab)
1ac: HEME C (HECac)
1ad: HEME C (HECad)
1ae: HEME C (HECae)
1af: HEME C (HECaf)
1ag: HEME C (HECag)
1ah: HEME C (HECah)
1ai: HEME C (HECai)
1aj: HEME C (HECaj)
1ak: HEME C (HECak)
1al: HEME C (HECal)
1am: HEME C (HECam)
1an: HEME C (HECan)
1ao: HEME C (HECao)
1ap: HEME C (HECap)
1aq: HEME C (HECaq)
1ar: HEME C (HECar)
1as: HEME C (HECas)
1at: HEME C (HECat)
1au: HEME C (HECau)
1av: HEME C (HECav)
1aw: HEME C (HECaw)
1ax: HEME C (HECax)
1ay: HEME C (HECay)
1az: HEME C (HECaz)
1b: HEME C (HECb)
1ba: HEME C (HECba)
1bb: HEME C (HECbb)
1bc: HEME C (HECbc)
1bd: HEME C (HECbd)
1be: HEME C (HECbe)
1bf: HEME C (HECbf)
1bg: HEME C (HECbg)
1bh: HEME C (HECbh)
1bi: HEME C (HECbi)
1bj: HEME C (HECbj)
1bk: HEME C (HECbk)
1bl: HEME C (HECbl)
1c: HEME C (HECc)
1d: HEME C (HECd)
1e: HEME C (HECe)
1f: HEME C (HECf)
1g: HEME C (HECg)
1h: HEME C (HECh)
1i: HEME C (HECi)
1j: HEME C (HECj)
1k: HEME C (HECk)
1l: HEME C (HECl)
1m: HEME C (HECm)
1n: HEME C (HECn)
1o: HEME C (HECo)
1p: HEME C (HECp)
1q: HEME C (HECq)
1r: HEME C (HECr)
1s: HEME C (HECs)
1t: HEME C (HECt)
1u: HEME C (HECu)
1v: HEME C (HECv)
1w: HEME C (HECw)
1x: HEME C (HECx)
1y: HEME C (HECy)
1z: HEME C (HECz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEC
64
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(64, 64)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:46 , PHE A:64 , HIS A:66 , CYS A:80 , CYS A:83 , HIS A:84 , LEU A:93 , LYS A:94 , PHE A:95 , ARG A:97 , TYR A:110 , HIS A:222 , ILE A:226 , HEC A:1102 , HEC A:1107 , HOH A:2060
BINDING SITE FOR RESIDUE HEC A1101
02
AC2
SOFTWARE
VAL A:62 , PHE A:64 , ARG A:65 , GLN A:68 , HIS A:69 , ALA A:72 , VAL A:73 , PHE A:95 , CYS A:114 , CYS A:117 , HIS A:118 , LEU A:121 , LYS A:127 , THR A:128 , GLY A:129 , PRO A:130 , HEC A:1101 , HOH A:2115 , HOH A:2116 , HOH A:2117
BINDING SITE FOR RESIDUE HEC A1102
03
AC3
SOFTWARE
ILE A:48 , GLY A:49 , ALA A:50 , MET A:51 , LEU A:57 , ASP A:58 , LEU A:59 , VAL A:62 , TYR A:110 , HIS A:111 , HIS A:118 , GLN A:131 , ASP A:132 , CYS A:135 , CYS A:138 , HIS A:139 , HOH A:2118 , GLN C:517
BINDING SITE FOR RESIDUE HEC A1103
04
AC4
SOFTWARE
GLY A:153 , PHE A:154 , HIS A:159 , HIS A:162 , ASN A:177 , CYS A:178 , CYS A:181 , HIS A:182 , GLU A:199 , SER A:201 , ARG A:203 , LEU A:265 , ASP A:266 , ASP A:307 , CYS A:308 , ARG A:309 , ILE A:316 , HEC A:1106
BINDING SITE FOR RESIDUE HEC A1104
05
AC5
SOFTWARE
CYS A:181 , HIS A:183 , TYR A:185 , SER A:201 , CYS A:202 , CYS A:205 , HIS A:206 , LYS A:213 , ARG A:214 , PRO A:215 , ALA A:220 , ALA A:224
BINDING SITE FOR RESIDUE HEC A1105
06
AC6
SOFTWARE
PHE A:154 , LEU A:158 , ARG A:161 , HIS A:162 , SER A:165 , ALA A:224 , CYS A:225 , CYS A:228 , HIS A:229 , GLU A:238 , GLY A:240 , PRO A:241 , PHE A:256 , LYS A:257 , HEC A:1104 , HEC A:1107 , HOH A:2040
BINDING SITE FOR RESIDUE HEC A1106
07
AC7
SOFTWARE
ILE A:46 , HIS A:66 , TRP A:149 , GLU A:151 , ILE A:152 , LEU A:217 , ALA A:221 , HIS A:222 , ILE A:226 , VAL A:242 , ASN A:243 , CYS A:244 , CYS A:247 , HIS A:248 , HEC A:1101 , HEC A:1106
BINDING SITE FOR RESIDUE HEC A1107
08
AC8
SOFTWARE
GLN A:269 , PRO A:270 , ILE A:275 , HIS A:298 , ALA A:305 , ASP A:307 , CYS A:308 , CYS A:311 , HIS A:312 , ILE A:316 , ASP A:317 , THR A:318 , CYS A:319 , THR A:320 , ARG A:406 , HEC A:1110
BINDING SITE FOR RESIDUE HEC A1108
09
AC9
SOFTWARE
CYS A:311 , HIS A:312 , HIS A:313 , THR A:318 , CYS A:319 , CYS A:322 , HIS A:323 , ASP A:330 , SER A:331 , LYS A:338 , ALA A:339 , SER A:345 , ARG A:347
BINDING SITE FOR RESIDUE HEC A1109
10
BC1
SOFTWARE
ILE A:275 , VAL A:294 , PHE A:296 , HIS A:301 , MET A:346 , ARG A:347 , CYS A:349 , CYS A:352 , HIS A:353 , ARG A:356 , ARG A:417 , LYS A:464 , THR A:468 , HEC A:1108 , HEC A:1112
BINDING SITE FOR RESIDUE HEC A1110
11
BC2
SOFTWARE
ARG A:356 , VAL A:357 , THR A:361 , CYS A:362 , CYS A:365 , HIS A:366 , ILE A:369 , PRO A:371 , THR A:372 , GLN A:377 , ILE A:460 , ASP A:463 , PHE A:469 , HIS A:470 , THR A:475 , LEU A:476 , GLN A:478 , GLY A:479 , HOH A:2120
BINDING SITE FOR RESIDUE HEC A1111
12
BC3
SOFTWARE
ILE A:275 , PRO A:277 , THR A:290 , MET A:291 , LYS A:292 , PRO A:293 , VAL A:294 , LEU A:336 , GLU A:337 , MET A:340 , HIS A:341 , CYS A:349 , CYS A:378 , CYS A:381 , HIS A:382 , HEC A:1110 , GLU C:261
BINDING SITE FOR RESIDUE HEC A1112
13
BC4
SOFTWARE
THR A:423 , ILE A:429 , HIS A:449 , CYS A:477 , CYS A:480 , HIS A:481 , SER A:487 , LEU A:488 , PRO A:490 , LYS A:492 , CYS A:493 , TYR A:515 , HEC A:1115 , HOH A:2121
BINDING SITE FOR RESIDUE HEC A1113
14
BC5
SOFTWARE
PHE A:368 , LYS A:370 , CYS A:480 , HIS A:482 , ASN A:483 , PRO A:491 , CYS A:493 , CYS A:496 , HIS A:497 , ALA A:514 , GLN A:517 , GLN A:518 , HOH A:2123
BINDING SITE FOR RESIDUE HEC A1114
15
BC6
SOFTWARE
ILE A:435 , PHE A:447 , ILE A:452 , THR A:455 , GLN A:518 , CYS A:519 , CYS A:522 , HIS A:523 , LYS A:530 , PRO A:531 , HEC A:1113 , HEC A:1116
BINDING SITE FOR RESIDUE HEC A1115
16
BC7
SOFTWARE
ILE A:435 , GLY A:436 , ILE A:438 , ALA A:439 , LYS A:440 , GLU A:441 , TYR A:442 , TYR A:515 , HIS A:516 , CYS A:519 , MET A:520 , ALA A:532 , ALA A:535 , CYS A:536 , CYS A:539 , HIS A:540 , HEC A:1115 , ALA C:122 , LYS C:123 , GLN C:131
BINDING SITE FOR RESIDUE HEC A1116
17
BC8
SOFTWARE
PHE B:64 , HIS B:66 , THR B:70 , ASP B:79 , CYS B:80 , CYS B:83 , HIS B:84 , LEU B:93 , LYS B:94 , PHE B:95 , ARG B:97 , TYR B:110 , HIS B:222 , MET B:230 , HEC B:1102 , HEC B:1107
BINDING SITE FOR RESIDUE HEC B1101
18
BC9
SOFTWARE
VAL B:62 , PHE B:64 , ARG B:65 , GLN B:68 , HIS B:69 , ALA B:72 , PHE B:95 , ASN B:113 , CYS B:114 , CYS B:117 , HIS B:118 , LEU B:121 , LYS B:127 , GLY B:129 , PRO B:130 , HEC B:1101
BINDING SITE FOR RESIDUE HEC B1102
19
CC1
SOFTWARE
ILE B:48 , GLY B:49 , ALA B:50 , MET B:51 , LEU B:57 , ASP B:58 , LEU B:59 , VAL B:62 , LYS B:107 , TYR B:110 , HIS B:111 , GLN B:131 , ASP B:132 , GLU B:134 , CYS B:135 , CYS B:138 , HIS B:139 , HOH B:2110 , GLN D:517
BINDING SITE FOR RESIDUE HEC B1103
20
CC2
SOFTWARE
GLY B:153 , PHE B:154 , HIS B:159 , HIS B:162 , ASN B:177 , CYS B:178 , CYS B:181 , HIS B:182 , GLU B:199 , SER B:201 , CYS B:202 , ARG B:203 , LEU B:265 , ASP B:307 , CYS B:308 , ARG B:309 , ILE B:316 , HEC B:1105 , HEC B:1106
BINDING SITE FOR RESIDUE HEC B1104
21
CC3
SOFTWARE
HIS B:183 , LEU B:192 , SER B:201 , CYS B:202 , CYS B:205 , HIS B:206 , LYS B:213 , ARG B:214 , ALA B:220 , HEC B:1104
BINDING SITE FOR RESIDUE HEC B1105
22
CC4
SOFTWARE
PHE B:154 , ARG B:161 , HIS B:162 , SER B:165 , ALA B:167 , CYS B:181 , ALA B:224 , CYS B:225 , CYS B:228 , HIS B:229 , GLU B:238 , THR B:239 , GLY B:240 , PRO B:241 , PHE B:256 , LYS B:257 , HEC B:1104 , HEC B:1107 , HOH B:2112 , HOH B:2113 , HOH B:2114 , HOH B:2115 , HOH B:2116 , HOH B:2117
BINDING SITE FOR RESIDUE HEC B1106
23
CC5
SOFTWARE
ILE B:46 , HIS B:66 , TRP B:149 , GLU B:151 , ILE B:152 , ASP B:218 , ALA B:221 , HIS B:222 , ILE B:226 , PRO B:241 , VAL B:242 , ASN B:243 , CYS B:244 , CYS B:247 , HIS B:248 , HEC B:1101 , HEC B:1106
BINDING SITE FOR RESIDUE HEC B1107
24
CC6
SOFTWARE
GLN B:269 , PRO B:270 , ILE B:275 , PHE B:296 , HIS B:298 , ALA B:305 , ASP B:307 , CYS B:308 , CYS B:311 , HIS B:312 , ILE B:316 , THR B:318 , CYS B:319 , THR B:320 , ARG B:406 , HEC B:1110 , HOH B:2118
BINDING SITE FOR RESIDUE HEC B1108
25
CC7
SOFTWARE
LYS A:166 , CYS B:311 , HIS B:312 , HIS B:313 , VAL B:314 , ARG B:315 , THR B:318 , CYS B:319 , CYS B:322 , HIS B:323 , ASP B:330 , SER B:331 , ALA B:339 , SER B:345 , ARG B:347 , HOH B:2078
BINDING SITE FOR RESIDUE HEC B1109
26
CC8
SOFTWARE
PHE B:296 , ASP B:297 , HIS B:301 , MET B:346 , ARG B:347 , SER B:348 , CYS B:349 , CYS B:352 , HIS B:353 , ARG B:417 , ASP B:463 , LYS B:464 , LEU B:465 , THR B:468 , HEC B:1108 , HEC B:1112
BINDING SITE FOR RESIDUE HEC B1110
27
CC9
SOFTWARE
VAL B:357 , THR B:361 , CYS B:362 , CYS B:365 , HIS B:366 , THR B:372 , GLN B:377 , ILE B:460 , ASP B:463 , PHE B:469 , HIS B:470 , THR B:475 , LEU B:476 , GLN B:478 , GLY B:479 , HOH B:2119 , HOH B:2120 , HOH B:2121
BINDING SITE FOR RESIDUE HEC B1111
28
DC1
SOFTWARE
ARG A:260 , GLU A:261 , ILE B:275 , LEU B:276 , PRO B:277 , THR B:290 , MET B:291 , LYS B:292 , VAL B:294 , MET B:340 , HIS B:341 , CYS B:349 , CYS B:378 , CYS B:381 , HIS B:382 , HEC B:1110 , HOH B:2122 , HOH B:2123
BINDING SITE FOR RESIDUE HEC B1112
29
DC2
SOFTWARE
THR B:423 , ILE B:429 , ILE B:435 , PHE B:447 , HIS B:449 , VAL B:453 , CYS B:477 , CYS B:480 , HIS B:481 , SER B:487 , LEU B:488 , PRO B:490 , LYS B:492 , CYS B:493 , TYR B:515 , HEC B:1115 , HOH B:2124 , HOH B:2125
BINDING SITE FOR RESIDUE HEC B1113
30
DC3
SOFTWARE
PHE B:368 , LYS B:370 , CYS B:480 , HIS B:482 , ASN B:483 , LYS B:492 , CYS B:493 , CYS B:496 , HIS B:497 , ASP B:507 , ALA B:514 , GLN B:517 , GLN B:518
BINDING SITE FOR RESIDUE HEC B1114
31
DC4
SOFTWARE
PHE B:447 , ILE B:452 , THR B:455 , GLN B:518 , CYS B:519 , CYS B:522 , HIS B:523 , MET B:526 , LYS B:530 , CYS B:539 , HEC B:1113
BINDING SITE FOR RESIDUE HEC B1115
32
DC5
SOFTWARE
ILE B:435 , GLY B:436 , SER B:437 , ILE B:438 , ALA B:439 , LYS B:440 , GLU B:441 , TYR B:442 , SER B:445 , LYS B:512 , TYR B:515 , HIS B:516 , CYS B:519 , ALA B:532 , ASN B:533 , CYS B:536 , CYS B:539 , HIS B:540 , LYS D:123 , GLN D:131
BINDING SITE FOR RESIDUE HEC B1116
33
DC6
SOFTWARE
ILE C:46 , HIS C:66 , THR C:70 , CYS C:80 , CYS C:83 , HIS C:84 , LEU C:93 , LYS C:94 , PHE C:95 , ARG C:97 , TYR C:110 , ASP C:218 , HIS C:222 , HEC C:1102 , HEC C:1107
BINDING SITE FOR RESIDUE HEC C1101
34
DC7
SOFTWARE
ILE C:48 , VAL C:62 , PHE C:64 , ARG C:65 , GLN C:68 , HIS C:69 , ALA C:72 , CYS C:114 , CYS C:117 , HIS C:118 , LEU C:121 , LYS C:127 , GLY C:129 , PRO C:130 , HEC C:1101
BINDING SITE FOR RESIDUE HEC C1102
35
DC8
SOFTWARE
GLN A:517 , ILE C:48 , GLY C:49 , ALA C:50 , MET C:51 , LEU C:57 , ASP C:58 , LEU C:59 , VAL C:62 , LYS C:107 , TYR C:110 , HIS C:111 , ILE C:115 , HIS C:118 , GLN C:131 , ASP C:132 , CYS C:135 , CYS C:138 , HIS C:139 , HOH C:2125 , HOH C:2126
BINDING SITE FOR RESIDUE HEC C1103
36
DC9
SOFTWARE
GLY C:153 , PHE C:154 , HIS C:159 , HIS C:162 , ASN C:177 , CYS C:178 , CYS C:181 , HIS C:182 , GLU C:199 , SER C:201 , CYS C:202 , ARG C:203 , ASP C:266 , ASP C:307 , CYS C:308 , ARG C:309 , HEC C:1105 , HEC C:1106 , HOH C:2128
BINDING SITE FOR RESIDUE HEC C1104
37
EC1
SOFTWARE
HIS C:183 , TYR C:185 , LEU C:192 , ASP C:200 , SER C:201 , CYS C:202 , CYS C:205 , HIS C:206 , LYS C:213 , ARG C:214 , PRO C:215 , ALA C:220 , THR C:223 , ALA C:224 , HEC C:1104 , HOH C:2045 , HOH C:2129
BINDING SITE FOR RESIDUE HEC C1105
38
EC2
SOFTWARE
PHE C:154 , LEU C:158 , ARG C:161 , HIS C:162 , SER C:165 , ILE C:168 , CYS C:181 , ALA C:224 , CYS C:225 , CYS C:228 , HIS C:229 , GLU C:238 , THR C:239 , GLY C:240 , PRO C:241 , PHE C:256 , LYS C:257 , HEC C:1104 , HEC C:1107 , HOH C:2041 , HOH C:2131
BINDING SITE FOR RESIDUE HEC C1106
39
EC3
SOFTWARE
ILE C:46 , HIS C:66 , TRP C:149 , GLU C:151 , ILE C:152 , ALA C:221 , HIS C:222 , PRO C:241 , VAL C:242 , ASN C:243 , CYS C:244 , CYS C:247 , HIS C:248 , HEC C:1101 , HEC C:1106
BINDING SITE FOR RESIDUE HEC C1107
40
EC4
SOFTWARE
GLN C:269 , PRO C:270 , ILE C:275 , PHE C:296 , HIS C:298 , ALA C:305 , ASP C:307 , CYS C:308 , CYS C:311 , HIS C:312 , ILE C:316 , THR C:318 , CYS C:319 , THR C:320 , ARG C:406 , HEC C:1110 , HOH C:2132
BINDING SITE FOR RESIDUE HEC C1108
41
EC5
SOFTWARE
CYS C:311 , HIS C:312 , HIS C:313 , VAL C:314 , ARG C:315 , THR C:318 , CYS C:319 , CYS C:322 , HIS C:323 , ASP C:330 , LYS C:338 , ALA C:339 , GLN C:342 , SER C:345 , ARG C:347 , HOH C:2133
BINDING SITE FOR RESIDUE HEC C1109
42
EC6
SOFTWARE
PHE C:296 , HIS C:301 , LYS C:304 , CYS C:311 , MET C:346 , ARG C:347 , SER C:348 , CYS C:349 , CYS C:352 , HIS C:353 , ARG C:356 , ARG C:417 , LYS C:464 , LEU C:465 , THR C:468 , HEC C:1108
BINDING SITE FOR RESIDUE HEC C1110
43
EC7
SOFTWARE
VAL C:357 , GLN C:359 , THR C:361 , CYS C:362 , CYS C:365 , HIS C:366 , ILE C:369 , PRO C:371 , THR C:372 , GLN C:377 , LEU C:456 , ILE C:460 , ASP C:463 , LEU C:465 , PHE C:469 , HIS C:470 , THR C:475 , LEU C:476 , GLN C:478 , GLY C:479 , HOH C:2085 , HOH C:2134
BINDING SITE FOR RESIDUE HEC C1111
44
EC8
SOFTWARE
GLU B:261 , ILE C:275 , PRO C:277 , GLY C:289 , THR C:290 , MET C:291 , LYS C:292 , VAL C:294 , LEU C:336 , GLU C:337 , MET C:340 , HIS C:341 , CYS C:349 , CYS C:378 , CYS C:381 , HIS C:382 , HOH C:2072
BINDING SITE FOR RESIDUE HEC C1112
45
EC9
SOFTWARE
THR C:423 , ILE C:429 , PRO C:430 , ILE C:435 , PHE C:447 , HIS C:449 , ILE C:452 , VAL C:453 , CYS C:477 , CYS C:480 , HIS C:481 , SER C:487 , LEU C:488 , PRO C:490 , LYS C:492 , CYS C:493 , TYR C:515 , GLN C:518 , HEC C:1115
BINDING SITE FOR RESIDUE HEC C1113
46
FC1
SOFTWARE
PHE C:368 , LYS C:370 , HIS C:482 , ASN C:483 , PRO C:491 , CYS C:493 , SER C:495 , CYS C:496 , HIS C:497 , ARG C:508 , ALA C:514 , GLN C:517 , GLN C:518 , HOH C:2136
BINDING SITE FOR RESIDUE HEC C1114
47
FC2
SOFTWARE
SER C:445 , PHE C:447 , PRO C:448 , ILE C:452 , THR C:455 , GLN C:518 , CYS C:519 , CYS C:522 , HIS C:523 , MET C:526 , LYS C:530 , PRO C:531 , CYS C:539 , HEC C:1113 , HEC C:1116
BINDING SITE FOR RESIDUE HEC C1115
48
FC3
SOFTWARE
THR A:119 , GLN A:131 , ILE C:435 , GLY C:436 , SER C:437 , ILE C:438 , ALA C:439 , LYS C:440 , GLU C:441 , TYR C:442 , LYS C:512 , TYR C:515 , HIS C:516 , CYS C:519 , MET C:520 , HIS C:523 , ALA C:532 , ASN C:533 , CYS C:536 , CYS C:539 , HIS C:540 , HEC C:1115 , HOH C:2107
BINDING SITE FOR RESIDUE HEC C1116
49
FC4
SOFTWARE
ILE D:46 , HIS D:66 , THR D:70 , CYS D:80 , CYS D:83 , HIS D:84 , LEU D:93 , LYS D:94 , PHE D:95 , ARG D:97 , TYR D:110 , HIS D:222 , ILE D:226 , MET D:230 , HEC D:1102 , HOH D:2108
BINDING SITE FOR RESIDUE HEC D1101
50
FC5
SOFTWARE
VAL D:62 , PHE D:64 , ARG D:65 , GLN D:68 , HIS D:69 , ALA D:72 , VAL D:73 , PHE D:95 , CYS D:114 , CYS D:117 , HIS D:118 , LEU D:121 , LYS D:127 , GLY D:129 , PRO D:130 , HEC D:1101
BINDING SITE FOR RESIDUE HEC D1102
51
FC6
SOFTWARE
GLN B:517 , ILE D:48 , GLY D:49 , ALA D:50 , MET D:51 , LEU D:57 , ASP D:58 , LEU D:59 , TYR D:110 , HIS D:111 , HIS D:118 , GLN D:131 , ASP D:132 , CYS D:135 , CYS D:138 , HIS D:139
BINDING SITE FOR RESIDUE HEC D1103
52
FC7
SOFTWARE
GLY D:153 , PHE D:154 , HIS D:159 , HIS D:162 , VAL D:163 , ASN D:177 , CYS D:178 , CYS D:181 , HIS D:182 , GLU D:199 , SER D:201 , ARG D:203 , LEU D:265 , ASP D:266 , ASP D:307 , CYS D:308 , ARG D:309 , ILE D:316 , HEC D:1105 , HEC D:1106 , HEC D:1108
BINDING SITE FOR RESIDUE HEC D1104
53
FC8
SOFTWARE
HIS D:183 , TYR D:185 , LEU D:192 , ASP D:200 , SER D:201 , CYS D:202 , CYS D:205 , HIS D:206 , LYS D:213 , ARG D:214 , PRO D:215 , ALA D:220 , ALA D:224 , HEC D:1104 , HOH D:2110
BINDING SITE FOR RESIDUE HEC D1105
54
FC9
SOFTWARE
PHE D:154 , ARG D:161 , HIS D:162 , SER D:165 , CYS D:225 , CYS D:228 , HIS D:229 , GLU D:238 , THR D:239 , GLY D:240 , PRO D:241 , PHE D:256 , HEC D:1104 , HEC D:1107 , HOH D:2032 , HOH D:2111
BINDING SITE FOR RESIDUE HEC D1106
55
GC1
SOFTWARE
ILE D:46 , HIS D:66 , TRP D:149 , GLU D:151 , ILE D:152 , ASP D:218 , ALA D:221 , HIS D:222 , CYS D:225 , ILE D:226 , VAL D:242 , ASN D:243 , CYS D:244 , CYS D:247 , HIS D:248 , HEC D:1106
BINDING SITE FOR RESIDUE HEC D1107
56
GC2
SOFTWARE
ARG D:267 , GLN D:269 , ILE D:275 , HIS D:298 , ALA D:305 , ASP D:307 , CYS D:308 , CYS D:311 , HIS D:312 , ILE D:316 , THR D:318 , CYS D:319 , THR D:320 , ARG D:406 , HEC D:1104 , HEC D:1110 , HOH D:2065
BINDING SITE FOR RESIDUE HEC D1108
57
GC3
SOFTWARE
CYS D:311 , HIS D:312 , HIS D:313 , THR D:318 , CYS D:319 , CYS D:322 , HIS D:323 , ASP D:330 , SER D:331 , LYS D:338 , ALA D:339 , GLN D:342 , SER D:345 , ARG D:347
BINDING SITE FOR RESIDUE HEC D1109
58
GC4
SOFTWARE
ILE D:275 , PHE D:296 , HIS D:301 , LYS D:304 , CYS D:311 , MET D:346 , ARG D:347 , SER D:348 , CYS D:349 , CYS D:352 , HIS D:353 , ARG D:356 , ARG D:417 , ASP D:463 , LYS D:464 , LEU D:465 , THR D:468 , HEC D:1108 , HEC D:1112
BINDING SITE FOR RESIDUE HEC D1110
59
GC5
SOFTWARE
VAL D:357 , CYS D:362 , CYS D:365 , HIS D:366 , ILE D:369 , PRO D:371 , THR D:372 , GLN D:377 , ASP D:463 , PHE D:469 , HIS D:470 , THR D:475 , LEU D:476 , GLN D:478 , GLY D:479
BINDING SITE FOR RESIDUE HEC D1111
60
GC6
SOFTWARE
GLU D:261 , ILE D:275 , PRO D:277 , GLY D:289 , THR D:290 , MET D:291 , LYS D:292 , PRO D:293 , VAL D:294 , LEU D:336 , MET D:340 , HIS D:341 , CYS D:349 , CYS D:378 , CYS D:381 , HIS D:382 , HEC D:1110
BINDING SITE FOR RESIDUE HEC D1112
61
GC7
SOFTWARE
ILE D:429 , ILE D:435 , PHE D:447 , HIS D:449 , VAL D:453 , CYS D:477 , CYS D:480 , HIS D:481 , SER D:487 , LEU D:488 , PRO D:490 , LYS D:492 , CYS D:493 , TYR D:515 , HEC D:1115
BINDING SITE FOR RESIDUE HEC D1113
62
GC8
SOFTWARE
PHE D:368 , LYS D:370 , CYS D:480 , HIS D:482 , ASN D:483 , CYS D:493 , CYS D:496 , HIS D:497 , ASP D:507 , ALA D:514 , GLN D:517 , GLN D:518
BINDING SITE FOR RESIDUE HEC D1114
63
GC9
SOFTWARE
SER D:445 , PHE D:447 , LYS D:451 , ILE D:452 , THR D:455 , CYS D:480 , GLN D:518 , CYS D:519 , CYS D:522 , HIS D:523 , LYS D:530 , HEC D:1113
BINDING SITE FOR RESIDUE HEC D1115
64
HC1
SOFTWARE
GLN B:131 , ILE D:435 , GLY D:436 , SER D:437 , ILE D:438 , ALA D:439 , LYS D:440 , GLU D:441 , TYR D:442 , LYS D:512 , TYR D:515 , HIS D:516 , CYS D:519 , MET D:520 , ALA D:532 , ASN D:533 , CYS D:536 , CYS D:539 , HIS D:540 , HOH D:2112
BINDING SITE FOR RESIDUE HEC D1116
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:75-543,B:75-541,C:75-544,D:75-54...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
HMWC_DESVH
75-545
4
A:75-543
B:75-541
C:75-544
D:75-542
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1h29a_ (A:)
1b: SCOP_d1h29b_ (B:)
1c: SCOP_d1h29c_ (C:)
1d: SCOP_d1h29d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Cytochrome c3-like
(70)
Protein domain
:
16-heme cytochrome c HmcA
(3)
Desulfovibrio vulgaris [TaxId: 881]
(3)
1a
d1h29a_
A:
1b
d1h29b_
B:
1c
d1h29c_
C:
1d
d1h29d_
D:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1h29A02 (A:149-258)
1b: CATH_1h29D01 (D:38-148)
1c: CATH_1h29B04 (B:421-541)
1d: CATH_1h29D04 (D:421-542)
1e: CATH_1h29A04 (A:421-543)
1f: CATH_1h29C04 (C:421-544)
1g: CATH_1h29D03 (D:270-420)
1h: CATH_1h29A03 (A:270-420)
1i: CATH_1h29B03 (B:270-420)
1j: CATH_1h29C03 (C:270-420)
1k: CATH_1h29B02 (B:149-258)
1l: CATH_1h29C02 (C:149-258)
1m: CATH_1h29D02 (D:149-258)
1n: CATH_1h29A01 (A:38-148)
1o: CATH_1h29B01 (B:38-148)
1p: CATH_1h29C01 (C:38-148)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough
(3)
1a
1h29A02
A:149-258
1b
1h29D01
D:38-148
1c
1h29B04
B:421-541
1d
1h29D04
D:421-542
1e
1h29A04
A:421-543
1f
1h29C04
C:421-544
1g
1h29D03
D:270-420
1h
1h29A03
A:270-420
1i
1h29B03
B:270-420
1j
1h29C03
C:270-420
1k
1h29B02
B:149-258
1l
1h29C02
C:149-258
1m
1h29D02
D:149-258
1n
1h29A01
A:38-148
1o
1h29B01
B:38-148
1p
1h29C01
C:38-148
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (409 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (101 KB)
Header - Biol.Unit 2
Biol.Unit 3 (103 KB)
Header - Biol.Unit 3
Biol.Unit 4 (100 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1H29
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help