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1GZ6
Biol. Unit 1
Info
Asym.Unit (210 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
(3R)-HYDROXYACYL-COA DEHYDROGENASE FRAGMENT OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2
Authors
:
A. M. Haapalainen, J. K. Hiltunen, T. Glumoff
Date
:
16 May 02 (Deposition) - 24 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Dehydrogenase, 17Beta-Hsd4, Mfe-2, Beta-Oxidation, Peroxisome, Sdr, Steroid Biosynthesis, Oxidoreductase, Nadp, Multigene Famil
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Reference
:
A. M. Haapalainen, M. K. Koski, Y. M. Qin, J. K. Hiltunen, T. Glumoff
Binary Structure Of The Two-Domain (3R)-Hydroxyacyl-Coa Dehydrogenase From Rat Peroxisomal Multifunctional Enzyme Type 2 At 2. 38 A Resolution
Structure V. 11 87 2003
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
2d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
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No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
2
NAI
2
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:4
BINDING SITE FOR RESIDUE SO4 A1303
2
AC2
SOFTWARE
ARG A:6 , PHE A:7 , ASP A:8 , ARG A:10 , GLU A:228 , HOH A:2233
BINDING SITE FOR RESIDUE SO4 A1304
3
AC3
SOFTWARE
GLY A:51 , SER A:52 , SER A:53 , GLY D:51 , SER D:52 , SER D:53
BINDING SITE FOR RESIDUE SO4 A1305
4
AC5
SOFTWARE
GLY A:16 , GLY A:19 , GLY A:20 , LEU A:21 , ASN A:39 , ASP A:40 , LEU A:41 , SER A:75 , VAL A:76 , ASN A:99 , ALA A:100 , GLY A:101 , ILE A:102 , HIS A:123 , THR A:149 , ALA A:150 , SER A:151 , TYR A:164 , LYS A:168 , PRO A:194 , ASN A:195 , ALA A:196 , SER A:198 , ARG A:199 , MSE A:200 , HOH A:2234 , HOH A:2235 , HOH A:2236 , HOH A:2237 , HOH A:2238
BINDING SITE FOR RESIDUE NAI A1306
5
AC6
SOFTWARE
GLY B:16 , GLY B:20 , LEU B:21 , ASN B:39 , ASP B:40 , LEU B:41 , SER B:75 , VAL B:76 , ASN B:99 , ALA B:100 , GLY B:101 , HIS B:123 , THR B:149 , SER B:151 , TYR B:164 , LYS B:168 , PRO B:194 , HOH B:2025 , HOH B:2055 , HOH B:2175 , HOH B:2176
BINDING SITE FOR RESIDUE NAI B1304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gz6a_ (A:)
1b: SCOP_d1gz6b_ (B:)
1c: SCOP_d1gz6c_ (C:)
1d: SCOP_d1gz6d_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
(3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1gz6a_
A:
1b
d1gz6b_
B:
1c
d1gz6c_
C:
1d
d1gz6d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1gz6B01 (B:3-246)
1b: CATH_1gz6C01 (C:4-246)
1c: CATH_1gz6A01 (A:3-246)
1d: CATH_1gz6D01 (D:3-246)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Rat (Rattus norvegicus)
(4)
1a
1gz6B01
B:3-246
1b
1gz6C01
C:4-246
1c
1gz6A01
A:3-246
1d
1gz6D01
D:3-246
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (210 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
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