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1GZ6
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
(3R)-HYDROXYACYL-COA DEHYDROGENASE FRAGMENT OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2
Authors
:
A. M. Haapalainen, J. K. Hiltunen, T. Glumoff
Date
:
16 May 02 (Deposition) - 24 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Dehydrogenase, 17Beta-Hsd4, Mfe-2, Beta-Oxidation, Peroxisome, Sdr, Steroid Biosynthesis, Oxidoreductase, Nadp, Multigene Famil
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Haapalainen, M. K. Koski, Y. M. Qin, J. K. Hiltunen, T. Glumoff
Binary Structure Of The Two-Domain (3R)-Hydroxyacyl-Coa Dehydrogenase From Rat Peroxisomal Multifunctional Enzyme Type 2 At 2. 38 A Resolution
Structure V. 11 87 2003
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
2d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
2
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:4
BINDING SITE FOR RESIDUE SO4 A1303
2
AC2
SOFTWARE
ARG A:6 , PHE A:7 , ASP A:8 , ARG A:10 , GLU A:228 , HOH A:2233
BINDING SITE FOR RESIDUE SO4 A1304
3
AC3
SOFTWARE
GLY A:51 , SER A:52 , SER A:53 , GLY D:51 , SER D:52 , SER D:53
BINDING SITE FOR RESIDUE SO4 A1305
4
AC4
SOFTWARE
ARG D:6 , PHE D:7 , ASP D:8 , ARG D:10 , GLU D:228 , HOH D:2213
BINDING SITE FOR RESIDUE SO4 D1304
5
AC5
SOFTWARE
GLY A:16 , GLY A:19 , GLY A:20 , LEU A:21 , ASN A:39 , ASP A:40 , LEU A:41 , SER A:75 , VAL A:76 , ASN A:99 , ALA A:100 , GLY A:101 , ILE A:102 , HIS A:123 , THR A:149 , ALA A:150 , SER A:151 , TYR A:164 , LYS A:168 , PRO A:194 , ASN A:195 , ALA A:196 , SER A:198 , ARG A:199 , MSE A:200 , HOH A:2234 , HOH A:2235 , HOH A:2236 , HOH A:2237 , HOH A:2238
BINDING SITE FOR RESIDUE NAI A1306
6
AC6
SOFTWARE
GLY B:16 , GLY B:20 , LEU B:21 , ASN B:39 , ASP B:40 , LEU B:41 , SER B:75 , VAL B:76 , ASN B:99 , ALA B:100 , GLY B:101 , HIS B:123 , THR B:149 , SER B:151 , TYR B:164 , LYS B:168 , PRO B:194 , HOH B:2025 , HOH B:2055 , HOH B:2175 , HOH B:2176
BINDING SITE FOR RESIDUE NAI B1304
7
AC7
SOFTWARE
GLY C:16 , GLY C:20 , LEU C:21 , ASN C:39 , ASP C:40 , LEU C:41 , SER C:75 , VAL C:76 , ASN C:99 , ALA C:100 , GLY C:101 , HIS C:123 , THR C:149 , SER C:151 , TYR C:164 , LYS C:168 , PRO C:194 , ASN C:195 , HOH C:2182 , HOH C:2185 , HOH C:2186
BINDING SITE FOR RESIDUE NAI C1304
8
AC8
SOFTWARE
GLY D:16 , GLY D:19 , GLY D:20 , LEU D:21 , ASN D:39 , ASP D:40 , LEU D:41 , SER D:75 , VAL D:76 , ASN D:99 , ALA D:100 , GLY D:101 , ILE D:102 , HIS D:123 , THR D:149 , ALA D:150 , SER D:151 , TYR D:164 , LYS D:168 , PRO D:194 , ASN D:195 , ALA D:196 , SER D:198 , ARG D:199 , MSE D:200 , HOH D:2011 , HOH D:2028 , HOH D:2214 , HOH D:2215 , HOH D:2216 , HOH D:2217
BINDING SITE FOR RESIDUE NAI D1305
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(12, 48)
Info
All Exons
Exon 1.1 (A:3-20 | B:3-20 | C:4-20 | D:3-20)
Exon 1.2 (A:20-38 | B:20-38 | C:20-38 | D:20...)
Exon 1.3 (A:38-74 | B:38-74 (gaps) | C:38-74...)
Exon 1.4 (A:74-94 | B:74-94 | C:74-94 | D:74...)
Exon 1.5 (A:94-101 | B:94-101 | C:94-101 | D...)
Exon 1.6 (A:101-117 | B:101-117 | C:101-117 ...)
Exon 1.7 (A:117-145 | B:117-145 | C:117-145 ...)
Exon 1.8 (A:145-208 | B:145-195 | C:145-208 ...)
Exon 1.9 (A:208-238 | B:211-238 | C:208-238 ...)
Exon 1.10 (A:239-247 | B:239-247 | C:239-247 ...)
Exon 1.11 (A:247-290 | B:247-290 | C:247-290 ...)
Exon 1.12 (A:290-304 | B:290-304 | C:290-304 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000021646
1
ENSRNOE00000351511
chr18:
45157435-45157541
107
DHB4_RAT
1-20
20
4
A:3-20
B:3-20
C:4-20
D:3-20
18
18
17
18
1.2
ENSRNOT00000021646
2
ENSRNOE00000254859
chr18:
45159340-45159393
54
DHB4_RAT
20-38
19
4
A:20-38
B:20-38
C:20-38
D:20-38
19
19
19
19
1.3
ENSRNOT00000021646
3
ENSRNOE00000254852
chr18:
45170200-45170307
108
DHB4_RAT
38-74
37
4
A:38-74
B:38-74 (gaps)
C:38-74 (gaps)
D:38-74
37
37
37
37
1.4
ENSRNOT00000021646
4
ENSRNOE00000151247
chr18:
45180531-45180590
60
DHB4_RAT
74-94
21
4
A:74-94
B:74-94
C:74-94
D:74-94
21
21
21
21
1.5
ENSRNOT00000021646
5
ENSRNOE00000254829
chr18:
45182511-45182532
22
DHB4_RAT
94-101
8
4
A:94-101
B:94-101
C:94-101
D:94-101
8
8
8
8
1.6
ENSRNOT00000021646
6
ENSRNOE00000254822
chr18:
45182636-45182682
47
DHB4_RAT
101-117
17
4
A:101-117
B:101-117
C:101-117
D:101-117
17
17
17
17
1.7
ENSRNOT00000021646
7
ENSRNOE00000151411
chr18:
45184493-45184577
85
DHB4_RAT
117-145
29
4
A:117-145
B:117-145
C:117-145
D:117-145
29
29
29
29
1.8
ENSRNOT00000021646
8
ENSRNOE00000151573
chr18:
45186080-45186267
188
DHB4_RAT
145-208
64
4
A:145-208
B:145-195
C:145-208 (gaps)
D:145-208
64
51
64
64
1.9
ENSRNOT00000021646
9
ENSRNOE00000151726
chr18:
45194421-45194512
92
DHB4_RAT
208-238
31
4
A:208-238
B:211-238
C:208-238
D:208-238
31
28
31
31
1.10
ENSRNOT00000021646
10
ENSRNOE00000254802
chr18:
45197605-45197629
25
DHB4_RAT
239-247
9
4
A:239-247
B:239-247
C:239-247
D:239-247
9
9
9
9
1.11
ENSRNOT00000021646
11
ENSRNOE00000152033
chr18:
45199377-45199505
129
DHB4_RAT
247-290
44
4
A:247-290
B:247-290
C:247-290
D:247-290
44
44
44
44
1.12
ENSRNOT00000021646
12
ENSRNOE00000152198
chr18:
45201715-45201815
101
DHB4_RAT
290-323
34
4
A:290-304
B:290-304
C:290-304
D:290-304
15
15
15
15
1.13
ENSRNOT00000021646
13
ENSRNOE00000152337
chr18:
45203708-45203944
237
DHB4_RAT
324-402
79
0
-
-
1.14
ENSRNOT00000021646
14
ENSRNOE00000152471
chr18:
45206045-45206096
52
DHB4_RAT
403-420
18
0
-
-
1.15
ENSRNOT00000021646
15
ENSRNOE00000152630
chr18:
45220168-45220239
72
DHB4_RAT
420-444
25
0
-
-
1.16
ENSRNOT00000021646
16
ENSRNOE00000152801
chr18:
45221461-45221564
104
DHB4_RAT
444-478
35
0
-
-
1.17
ENSRNOT00000021646
17
ENSRNOE00000152976
chr18:
45222854-45222919
66
DHB4_RAT
479-500
22
0
-
-
1.18
ENSRNOT00000021646
18
ENSRNOE00000153065
chr18:
45226202-45226271
70
DHB4_RAT
501-524
24
0
-
-
1.19
ENSRNOT00000021646
19
ENSRNOE00000153211
chr18:
45227341-45227447
107
DHB4_RAT
524-559
36
0
-
-
1.20
ENSRNOT00000021646
20
ENSRNOE00000153377
chr18:
45228583-45228669
87
DHB4_RAT
560-588
29
0
-
-
1.21
ENSRNOT00000021646
21
ENSRNOE00000153541
chr18:
45231385-45231471
87
DHB4_RAT
589-617
29
0
-
-
1.22
ENSRNOT00000021646
22
ENSRNOE00000153708
chr18:
45232669-45232807
139
DHB4_RAT
618-664
47
0
-
-
1.24
ENSRNOT00000021646
24
ENSRNOE00000153863
chr18:
45244294-45244421
128
DHB4_RAT
664-706
43
0
-
-
1.25
ENSRNOT00000021646
25
ENSRNOE00000458015
chr18:
45251190-45251606
417
DHB4_RAT
707-735
29
0
-
-
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gz6a_ (A:)
1b: SCOP_d1gz6b_ (B:)
1c: SCOP_d1gz6c_ (C:)
1d: SCOP_d1gz6d_ (D:)
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)
(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
(3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1gz6a_
A:
1b
d1gz6b_
B:
1c
d1gz6c_
C:
1d
d1gz6d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1gz6B01 (B:3-246)
1b: CATH_1gz6C01 (C:4-246)
1c: CATH_1gz6A01 (A:3-246)
1d: CATH_1gz6D01 (D:3-246)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Rat (Rattus norvegicus)
(4)
1a
1gz6B01
B:3-246
1b
1gz6C01
C:4-246
1c
1gz6A01
A:3-246
1d
1gz6D01
D:3-246
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Pfam Domains
(0, 0)
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all PFAM domains
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