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1GQL
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (258 KB)
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(1)
Title
:
STRUCTURE OF PSEUDOMONAS CELLULOSA ALPHA-D-GLUCURONIDASE COMPLEXED WITH GLUCURONIC ACID AND XYLOTRIOSE
Authors
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
Date
:
26 Nov 01 (Deposition) - 26 Sep 02 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Glucuronidase, (Alpha-Beta)8 Barrel, Glycoside Hydrolase, Glucuronic Acid, Xylotriose
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
The Structural Basis For Catalysis And Specificity Of The Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A
Structure V. 10 547 2002
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
1b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
2e: COBALT (II) ION (COe)
2f: COBALT (II) ION (COf)
2g: COBALT (II) ION (COg)
2h: COBALT (II) ION (COh)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
4a: BETA-D-XYLOPYRANOSE (XYPa)
4b: BETA-D-XYLOPYRANOSE (XYPb)
4c: BETA-D-XYLOPYRANOSE (XYPc)
4d: BETA-D-XYLOPYRANOSE (XYPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
2
CO
8
Ligand/Ion
COBALT (II) ION
3
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
4
XYP
4
Ligand/Ion
BETA-D-XYLOPYRANOSE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:169 , HIS A:528 , BDP A:1706 , XYP A:1713
BINDING SITE FOR RESIDUE XYP A 1712
02
AC2
SOFTWARE
GLU A:292 , PHE A:327 , TYR A:329 , ARG A:336 , ASP A:365 , HIS A:521 , GLN A:525 , HIS A:528 , TRP A:543 , BDP A:1706 , XYP A:1712
BINDING SITE FOR RESIDUE XYP A 1713
03
AC3
SOFTWARE
ARG B:169 , HIS B:528 , BDP B:1705 , XYP B:1713
BINDING SITE FOR RESIDUE XYP B 1712
04
AC4
SOFTWARE
GLU B:292 , PHE B:327 , TYR B:329 , ARG B:336 , ASP B:365 , HIS B:521 , GLN B:525 , HIS B:528 , TRP B:543 , BDP B:1705 , XYP B:1712
BINDING SITE FOR RESIDUE XYP B 1713
05
AC5
SOFTWARE
TRP A:160 , GLU A:168 , ARG A:169 , ASN A:211 , LYS A:288 , ARG A:325 , PHE A:327 , LYS A:360 , ASP A:365 , GLU A:393 , XYP A:1712 , XYP A:1713 , HOH A:2698
BINDING SITE FOR RESIDUE BDP A 1706
06
AC6
SOFTWARE
TRP B:160 , GLU B:168 , ARG B:169 , ASN B:211 , LYS B:288 , ARG B:325 , PHE B:327 , LYS B:360 , ASP B:365 , GLU B:393 , XYP B:1712 , XYP B:1713 , HOH B:2707
BINDING SITE FOR RESIDUE BDP B 1705
07
AC7
SOFTWARE
ALA A:625 , THR A:629
BINDING SITE FOR RESIDUE CO A 1714
08
AC8
SOFTWARE
GLY A:7 , ASN A:452 , PRO A:457 , HOH A:2489 , HOH A:2652
BINDING SITE FOR RESIDUE CO A 1715
09
AC9
SOFTWARE
ASN A:607 , TRP A:609 , ARG A:673
BINDING SITE FOR RESIDUE CO A 1716
10
BC1
SOFTWARE
ASN A:162 , ASN A:164
BINDING SITE FOR RESIDUE CO A 1717
11
BC2
SOFTWARE
THR B:629 , HOH B:2621
BINDING SITE FOR RESIDUE CO B 1714
12
BC3
SOFTWARE
GLY B:7 , ASN B:452 , PRO B:457 , GLN B:460 , ARG B:641 , HOH B:2481 , HOH B:2654
BINDING SITE FOR RESIDUE CO B 1715
13
BC4
SOFTWARE
ASN B:162 , ASN B:164 , HOH B:2715
BINDING SITE FOR RESIDUE CO B 1716
14
BC5
SOFTWARE
ASN B:607 , TRP B:609 , ARG B:673
BINDING SITE FOR RESIDUE CO B 1717
15
BC6
SOFTWARE
TYR A:101 , HIS A:130 , ARG A:133 , SER A:199 , LEU A:200 , TRP A:471 , HOH A:2699
BINDING SITE FOR RESIDUE EDO A 1707
16
BC7
SOFTWARE
ARG A:51 , PRO A:188 , ASP A:192 , HOH A:2247 , HOH A:2700 , HOH A:2701
BINDING SITE FOR RESIDUE EDO A 1708
17
BC8
SOFTWARE
HIS A:130 , ARG A:133 , SER A:148 , ARG A:468 , TRP A:471 , ILE A:475 , HOH A:2492
BINDING SITE FOR RESIDUE EDO A 1709
18
BC9
SOFTWARE
TYR A:8 , ASP A:9 , LEU A:12 , ASP A:192 , ARG A:195 , ILE A:196 , HOH A:2020 , HOH A:2702
BINDING SITE FOR RESIDUE EDO A 1710
19
CC1
SOFTWARE
ASP A:631 , LYS A:646 , GLN A:650 , HOH A:2703
BINDING SITE FOR RESIDUE EDO A 1711
20
CC2
SOFTWARE
TYR B:101 , HIS B:130 , ARG B:133 , SER B:199 , LEU B:200 , TRP B:471 , HOH B:2708
BINDING SITE FOR RESIDUE EDO B 1706
21
CC3
SOFTWARE
ARG B:51 , ASP B:192 , HOH B:2248 , HOH B:2709
BINDING SITE FOR RESIDUE EDO B 1707
22
CC4
SOFTWARE
ASN B:559 , THR B:561 , HIS B:594 , HIS B:595 , HOH B:2710 , HOH B:2711
BINDING SITE FOR RESIDUE EDO B 1708
23
CC5
SOFTWARE
TYR B:8 , ASP B:9 , LEU B:12 , ASP B:192 , ARG B:195 , ILE B:196 , HOH B:2020 , HOH B:2712
BINDING SITE FOR RESIDUE EDO B 1709
24
CC6
SOFTWARE
GLY A:349 , LYS A:350 , PHE A:351 , GLY B:420 , GLU B:421 , HOH B:2713
BINDING SITE FOR RESIDUE EDO B 1710
25
CC7
SOFTWARE
HIS B:130 , ARG B:133 , SER B:148 , ARG B:468 , TRP B:471 , ILE B:475 , HOH B:2484
BINDING SITE FOR RESIDUE EDO B 1711
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1gqla2 (A:5-151)
1b: SCOP_d1gqlb2 (B:5-151)
2a: SCOP_d1gqla1 (A:152-705)
2b: SCOP_d1gqlb1 (B:152-704)
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)
(
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(
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
1a
d1gqla2
A:5-151
1b
d1gqlb2
B:5-151
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
2a
d1gqla1
A:152-705
2b
d1gqlb1
B:152-704
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1gqlB01 (B:18-148)
1b: CATH_1gqlA01 (A:5-150)
2a: CATH_1gqlA02 (A:151-474)
2b: CATH_1gqlB02 (B:153-472)
3a: CATH_1gqlB03 (B:476-704)
3b: CATH_1gqlA03 (A:475-705)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Cellvibrio japonicus. Organism_taxid: 155077.
(1)
1a
1gqlB01
B:18-148
1b
1gqlA01
A:5-150
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Cellvibrio japonicus. Organism_taxid: 155077.
(10)
2a
1gqlA02
A:151-474
2b
1gqlB02
B:153-472
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Cellvibrio japonicus. Organism_taxid: 155077.
(1)
3a
1gqlB03
B:476-704
3b
1gqlA03
A:475-705
[
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Pfam Domains
(0, 0)
Info
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