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1GN9
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 X-RAY STRUCTURE AT 2.6A RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF 1.722A
Authors
:
S. Macedo, E. P. Mitchell, C. V. Romao, S. J. Cooper, R. Coelho, M. Y. Liu, A. V. Xavier, J. Legall, S. Bailey, D. C. Garner, W. R. Hagen, M. Teixeir M. A. Carrondo, P. Lindley
Date
:
04 Oct 01 (Deposition) - 11 Apr 02 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hybrid Cluster, Hybrid Cluster Protein, Anaerobic Desulfovibrio Desulfuricans, Iron Anomalous
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Macedo, E. P. Mitchell, C. V. Romao, S. J. Cooper, R. Coelho, M. Y. Liu A. V. Xavier, J. Legall, S. Bailey, D. C. Garner, W. R. Hagen, M. Teixeira, M. A. Carrondo, P. Lindley
Hybrid Cluster Proteins (Hcps) From Desulfovibrio Desulfuricans Atcc 27774 And Desulfovibrio Vulgaris (Hildenborough): X-Ray Structures At 1. 25 A Resolution Using Synchrotron Radiation.
J. Biol. Inorg. Chem. V. 7 514 2002
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
2a: 4FE-2S-O HYBRID CLUSTER (FSFa)
3a: IRON/SULFUR/OXYGEN HYBRID CLUSTER (FSOa)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
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No.
Name
Count
Type
Full Name
1
CSS
2
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
FSF
1
Ligand/Ion
4FE-2S-O HYBRID CLUSTER
3
FSO
1
Ligand/Ion
IRON/SULFUR/OXYGEN HYBRID CLUSTER
4
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:240 , SER A:263 , GLU A:264 , TRP A:288 , CYS A:308 , CSS A:399 , CYS A:427 , CYS A:452 , GLU A:487
BINDING SITE FOR RESIDUE FSF A 600
2
AC2
SOFTWARE
MET A:4 , CYS A:6 , TYR A:7 , GLN A:8 , CYS A:9 , THR A:12 , CYS A:18 , GLY A:22 , VAL A:23 , CYS A:24 , THR A:75
BINDING SITE FOR RESIDUE SF4 A 650
3
AC3
SOFTWARE
HIS B:240 , GLU B:264 , ASN B:307 , CYS B:308 , CSS B:399 , CYS B:427 , CYS B:452 , GLU B:487 , LYS B:489
BINDING SITE FOR RESIDUE FSO B 600
4
AC4
SOFTWARE
CYS B:6 , TYR B:7 , GLN B:8 , CYS B:9 , THR B:12 , CYS B:18 , GLY B:22 , VAL B:23 , CYS B:24 , THR B:75
BINDING SITE FOR RESIDUE SF4 B 650
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gn9a_ (A:)
1b: SCOP_d1gn9b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Hybrid cluster protein (prismane protein)
(10)
Protein domain
:
Hybrid cluster protein (prismane protein)
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(4)
1a
d1gn9a_
A:
1b
d1gn9b_
B:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1gn9A04 (A:378-543)
1b: CATH_1gn9A03 (A:225-375)
1c: CATH_1gn9B03 (B:225-375)
1d: CATH_1gn9B04 (B:378-543)
2a: CATH_1gn9A01 (A:1-139)
2b: CATH_1gn9A02 (A:140-223)
2c: CATH_1gn9B02 (B:140-223)
2d: CATH_1gn9B01 (B:1-139)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
1a
1gn9A04
A:378-543
1b
1gn9A03
A:225-375
1c
1gn9B03
B:225-375
1d
1gn9B04
B:378-543
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.20, no name defined]
(10)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
2a
1gn9A01
A:1-139
2b
1gn9A02
A:140-223
2c
1gn9B02
B:140-223
2d
1gn9B01
B:1-139
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (163 KB)
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