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1GK6
Asym. Unit
Info
Asym.Unit (27 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)
Authors
:
S. V. Strelkov, H. Herrmann, N. Geisler, R. Zimbelmann, U. Aebi, P. Burk
Date
:
08 Aug 01 (Deposition) - 15 Mar 02 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Protein, Intermediate Filament, Dimer, Parallel Coiled Coil, Heptad Repeat, Leucine Zipper, Fusion Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Strelkov, H. Herrmann, N. Geisler, T. Wedig, R. Zimbelmann, U. Aebi P. Burkhard
Conserved Segments 1A And 2B Of The Intermediate Filament Dimer: Their Atomic Structures And Role In Filament Assembly.
Embo J. V. 21 1255 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: BZIP (A:375-402,B:375-402)
2: BZIP_BASIC (A:375-378,B:375-378)
3: IF (A:397-405,B:397-405)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BZIP
PS50217
Basic-leucine zipper (bZIP) domain profile.
GCN4_YEAST
231-276
2
A:375-402
B:375-402
2
BZIP_BASIC
PS00036
Basic-leucine zipper (bZIP) domain signature.
GCN4_YEAST
231-245
2
A:375-378
B:375-378
3
IF
PS00226
Intermediate filaments signature.
VIME_HUMAN
397-405
2
A:397-405
B:397-405
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Exons
(3, 6)
Info
All Exons
Exon 1.5b (A:355-360 (gaps) | B:355-360 (gaps...)
Exon 1.6 (A:361-368 (gaps) | B:361-368 (gaps...)
Exon 1.8a (A:369-409 (gaps) | B:369-406 (gaps...)
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All Exon Boundaries
1: Boundary 1.4c/1.5b
2: Boundary 1.5b/1.6
3: Boundary 1.6/1.7a
4: Boundary 1.7a/1.8a
5: Boundary 1.8a/1.8c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3d
ENST00000224237
3d
ENSE00002186269
chr10:
17271277-17271984
708
VIME_HUMAN
1-188
188
0
-
-
1.4c
ENST00000224237
4c
ENSE00001270958
chr10:
17272649-17272709
61
VIME_HUMAN
188-208
21
0
-
-
1.5b
ENST00000224237
5b
ENSE00000692805
chr10:
17275586-17275681
96
VIME_HUMAN
209-240
32
2
A:355-360 (gaps)
B:355-360 (gaps)
7
7
1.6
ENST00000224237
6
ENSE00000692809
chr10:
17275769-17275930
162
VIME_HUMAN
241-294
54
2
A:361-368 (gaps)
B:361-368 (gaps)
22
22
1.7a
ENST00000224237
7a
ENSE00000692812
chr10:
17276692-17276817
126
VIME_HUMAN
295-336
42
0
-
-
1.8a
ENST00000224237
8a
ENSE00001270949
chr10:
17277168-17277388
221
VIME_HUMAN
337-410
74
2
A:369-409 (gaps)
B:369-406 (gaps)
53
50
1.8c
ENST00000224237
8c
ENSE00001121153
chr10:
17277845-17277888
44
VIME_HUMAN
410-425
16
0
-
-
1.8e
ENST00000224237
8e
ENSE00000815998
chr10:
17278293-17278378
86
VIME_HUMAN
425-453
29
0
-
-
1.9
ENST00000224237
9
ENSE00001906870
chr10:
17279229-17279592
364
VIME_HUMAN
454-466
13
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gk6a_ (A:)
1b: SCOP_d1gk6b_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Intermediate filament protein, coiled coil region
(7)
Family
:
Intermediate filament protein, coiled coil region
(6)
Protein domain
:
Vimentin coil
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1gk6a_
A:
1b
d1gk6b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gk6B00 (B:355-406)
1b: CATH_1gk6A00 (A:355-409)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
[unclassified]
(20)
1a
1gk6B00
B:355-406
1b
1gk6A00
A:355-409
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (27 KB)
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