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1GAL
Biol. Unit 1
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION
Authors
:
H. J. Hecht, K. Kalisz, J. Hendle, R. D. Schmid, D. Schomburg
Date
:
27 Aug 92 (Deposition) - 31 Oct 93 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase(Flavoprotein)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Hecht, H. M. Kalisz, J. Hendle, R. D. Schmid, D. Schomburg
Crystal Structure Of Glucose Oxidase From Aspergillus Niger Refined At 2. 3 A Resolution.
J. Mol. Biol. V. 229 153 1993
(for further references see the
PDB file header
)
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:87 , ASN A:89 , ASN A:493 , TYR A:509 , NAG A:602
BINDING SITE FOR RESIDUE NAG A 601
02
AC2
SOFTWARE
ARG A:337 , GLU A:487 , THR A:488 , ASP A:492 , NAG A:601 , BMA A:613 , HOH A:815
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
ARG A:337 , GLY A:486 , GLU A:487 , NAG A:602 , MAN A:615
BINDING SITE FOR RESIDUE BMA A 613
04
AC4
SOFTWARE
GLY A:486 , GLU A:487 , BMA A:613 , MAN A:616
BINDING SITE FOR RESIDUE MAN A 615
05
AC5
SOFTWARE
MAN A:615
BINDING SITE FOR RESIDUE MAN A 616
06
AC6
SOFTWARE
ASN A:355 , GLU A:363 , VAL A:404 , ASN A:407 , HOH A:819
BINDING SITE FOR RESIDUE NAG A 604
07
AC7
SOFTWARE
ARG A:37 , TYR A:139 , GLN A:142 , ASN A:388 , GLU A:527 , MET A:528 , ASP A:573
BINDING SITE FOR RESIDUE NAG A 605
08
AC8
SOFTWARE
TYR A:159 , ASN A:161 , CYS A:164
BINDING SITE FOR RESIDUE NAG A 608
09
AC9
SOFTWARE
GLY A:127 , GLU A:129 , ASN A:168 , ASP A:533 , ASN A:534
BINDING SITE FOR RESIDUE NAG A 609
10
BC1
SOFTWARE
GLY A:26 , GLY A:28 , LEU A:29 , THR A:30 , ILE A:49 , GLU A:50 , SER A:51 , TYR A:68 , PHE A:72 , HIS A:78 , ARG A:95 , GLY A:97 , ASN A:98 , GLY A:99 , GLY A:102 , SER A:103 , ASN A:107 , GLY A:108 , GLY A:109 , THR A:110 , TYR A:249 , VAL A:250 , ALA A:288 , ALA A:289 , GLY A:290 , VAL A:293 , TYR A:515 , HIS A:516 , ASP A:548 , GLY A:549 , HIS A:559 , VAL A:560 , MET A:561 , PHE A:564 , HOH A:835 , HOH A:841 , HOH A:847 , HOH A:848 , HOH A:851
BINDING SITE FOR RESIDUE FAD A 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GMC_OXRED_1 (A:97-120)
2: GMC_OXRED_2 (A:290-304)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GMC_OXRED_1
PS00623
GMC oxidoreductases signature 1.
GOX_ASPNG
119-142
1
A:97-120
2
GMC_OXRED_2
PS00624
GMC oxidoreductases signature 2.
GOX_ASPNG
312-326
1
A:290-304
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1gala2 (A:325-520)
2a: SCOP_d1gala1 (A:3-324,A:521-583)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
GMC oxidoreductases
(30)
Protein domain
:
Glucose oxidase
(5)
Aspergillus niger [TaxId: 5061]
(4)
1a
d1gala2
A:325-520
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Glucose oxidase
(5)
Aspergillus niger [TaxId: 5061]
(4)
2a
d1gala1
A:3-324,A:521-583
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1galA03 (A:110-217,A:325-370,A:406-434,A:452-518,A:554-570)
2a: CATH_1galA01 (A:3-52,A:236-324,A:435-451,A:519-553,A:571-583)
3a: CATH_1galA02 (A:53-81,A:93-109,A:218-235)
View:
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Glucose Oxidase; domain 3
(3)
Homologous Superfamily
:
Glucose Oxidase, domain 3
(3)
Aspergillus niger. Organism_taxid: 5061
(2)
1a
1galA03
A:110-217,A:325-370,A:406-434,A:452-518,A:554-570
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Aspergillus niger. Organism_taxid: 5061
(2)
2a
1galA01
A:3-52,A:236-324,A:435-451,A:519-553,A:571-583
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Glucose Oxidase; domain 2
(3)
Homologous Superfamily
:
Glucose Oxidase, domain 2
(3)
Aspergillus niger. Organism_taxid: 5061
(2)
3a
1galA02
A:53-81,A:93-109,A:218-235
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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