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1G6N
Asym. Unit
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Asym.Unit (72 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
2.1 ANGSTROM STRUCTURE OF CAP-CAMP
Authors
:
J. M. Passner, S. C. Schultz, T. A. Steitz
Date
:
07 Nov 00 (Deposition) - 15 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Catabolite Activator Protein (Cap), Camp Receptor Protein (Crp), Transcription, Allostery, Cyclic Amp, Camp, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Passner, S. C. Schultz, T. A. Steitz
Modeling The Camp-Induced Allosteric Transition Using The Crystal Structure Of Cap-Camp At 2. 1 A Resolution.
J. Mol. Biol. V. 304 847 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
1b: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPb)
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Label:
No.
Name
Count
Type
Full Name
1
CMP
2
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:49 , LEU A:61 , SER A:62 , ILE A:70 , GLY A:71 , GLU A:72 , LEU A:73 , ARG A:82 , SER A:83 , ALA A:84 , THR A:127 , HOH A:712 , HOH A:717 , SER B:428 , HOH B:769
BINDING SITE FOR RESIDUE CMP A 621
2
AC2
SOFTWARE
LEU A:124 , SER A:128 , VAL B:349 , LEU B:361 , ILE B:370 , GLY B:371 , GLU B:372 , LEU B:373 , ARG B:382 , SER B:383 , ALA B:384 , ARG B:423 , THR B:427 , HOH B:743 , HOH B:744 , HOH B:771
BINDING SITE FOR RESIDUE CMP B 622
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(5, 10)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:23-123,B:323-423)
2: CNMP_BINDING_1 (A:29-45,B:329-345)
3: CNMP_BINDING_2 (A:70-88,B:370-388)
4: HTH_CRP_2 (A:137-206,B:437-507)
5: HTH_CRP_1 (A:167-190,B:467-490)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
CRP_ECOLI
24-124
2
A:23-123
B:323-423
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
CRP_ECOLI
30-46
2
A:29-45
B:329-345
3
CNMP_BINDING_2
PS00889
Cyclic nucleotide-binding domain signature 2.
CRP_ECOLI
71-89
2
A:70-88
B:370-388
4
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
CRP_ECOLI
138-210
2
A:137-206
B:437-507
5
HTH_CRP_1
PS00042
Crp-type HTH domain signature.
CRP_ECOLI
168-191
2
A:167-190
B:467-490
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1g6na1 (A:138-206)
1b: SCOP_d1g6nb1 (B:438-507)
2a: SCOP_d1g6na2 (A:7-137)
2b: SCOP_d1g6nb2 (B:307-437)
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Protein Domains
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(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
CAP C-terminal domain-like
(39)
Protein domain
:
Catabolite gene activator protein (CAP), C-terminal domain
(24)
Escherichia coli [TaxId: 562]
(24)
1a
d1g6na1
A:138-206
1b
d1g6nb1
B:438-507
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
cAMP-binding domain
(78)
Protein domain
:
Catabolite gene activator protein, N-terminal domain
(28)
Escherichia coli [TaxId: 562]
(28)
2a
d1g6na2
A:7-137
2b
d1g6nb2
B:307-437
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1g6nA02 (A:138-206)
1b: CATH_1g6nB02 (B:438-506)
2a: CATH_1g6nA01 (A:9-137)
2b: CATH_1g6nB01 (B:309-437)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Escherichia coli. Organism_taxid: 562.
(15)
1a
1g6nA02
A:138-206
1b
1g6nB02
B:438-506
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1g6nA01
A:9-137
2b
1g6nB01
B:309-437
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Pfam Domains
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Asymmetric Unit 1
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