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1G51
Asym. Unit
Info
Asym.Unit (209 KB)
Biol.Unit 1 (203 KB)
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(1)
Title
:
ASPARTYL TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.4 A RESOLUTION
Authors
:
A. Poterzsman, M. Delarue, J. C. Thierry, D. Moras
Date
:
30 Oct 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aminoacyl Trna Synthetase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Poterszman, M. Delarue, J. C. Thierry, D. Moras
Synthesis And Recognition Of Aspartyl-Adenylate By Thermus Thermophilus Aspartyl-Trna Synthetase.
J. Mol. Biol. V. 244 158 1994
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ASPARTYL-ADENOSINE-5'-MONOPHOSPHAT... (AMOa)
1b: ASPARTYL-ADENOSINE-5'-MONOPHOSPHAT... (AMOb)
2a: ADENOSINE MONOPHOSPHATE (AMPa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AMO
2
Ligand/Ion
ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE
2
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:1231 , ARG B:1531 , HOH B:2391 , HOH B:2513
BINDING SITE FOR RESIDUE SO4 B 901
2
AC2
SOFTWARE
ARG A:231 , ARG A:531 , HOH A:2412 , HOH A:2451
BINDING SITE FOR RESIDUE SO4 A 1901
3
AC3
SOFTWARE
GLU A:177 , SER A:199 , GLN A:201 , LYS A:204 , ARG A:223 , GLU A:225 , ASP A:230 , ARG A:231 , GLN A:232 , PHE A:235 , GLN A:237 , HIS A:442 , HIS A:443 , GLU A:476 , GLY A:478 , GLY A:479 , GLY A:480 , ARG A:483 , ILE A:525 , ALA A:526 , GLY A:528 , ARG A:531 , HOH A:2027 , HOH A:2028 , HOH A:2224 , HOH A:2428
BINDING SITE FOR RESIDUE AMO A 831
4
AC4
SOFTWARE
GLU B:1177 , SER B:1199 , GLN B:1201 , LYS B:1204 , ARG B:1223 , GLU B:1225 , ASP B:1230 , ARG B:1231 , GLN B:1232 , PHE B:1235 , GLN B:1237 , HIS B:1442 , HIS B:1443 , GLU B:1476 , VAL B:1477 , GLY B:1478 , GLY B:1479 , GLY B:1480 , ARG B:1483 , ILE B:1525 , ALA B:1526 , GLY B:1528 , ARG B:1531 , HOH B:2013 , HOH B:2145 , HOH B:2265 , HOH B:2524
BINDING SITE FOR RESIDUE AMO B 1831
5
AC5
SOFTWARE
PHE B:1311 , VAL B:1313 , GLU B:1338 , GLN B:1347 , GLY B:1348 , LEU B:1349 , ALA B:1350 , PHE B:1388 , VAL B:1389 , ALA B:1390
BINDING SITE FOR RESIDUE AMP B 800
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1g51a1 (A:1-104)
1b: SCOP_d1g51b1 (B:1001-1104)
2a: SCOP_d1g51a3 (A:105-294,A:415-580)
2b: SCOP_d1g51b3 (B:1105-1294,B:1415-1580)
3a: SCOP_d1g51a2 (A:295-414)
3b: SCOP_d1g51b2 (B:1295-1414)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Anticodon-binding domain
(21)
Protein domain
:
Aspartyl-tRNA synthetase (AspRS)
(11)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
1a
d1g51a1
A:1-104
1b
d1g51b1
B:1001-1104
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Aspartyl-tRNA synthetase (AspRS)
(11)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
2a
d1g51a3
A:105-294,A:415-580
2b
d1g51b3
B:1105-1294,B:1415-1580
Fold
:
DCoH-like
(107)
Superfamily
:
GAD domain-like
(9)
Family
:
GAD domain
(8)
Protein domain
:
Prokaryotic AspRS, insert domain
(6)
Thermus thermophilus, AspRS-1 [TaxId: 274]
(3)
3a
d1g51a2
A:295-414
3b
d1g51b2
B:1295-1414
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1g51A02 (A:137-277,A:416-580)
1b: CATH_1g51B02 (B:1137-1277,B:1416-1580)
2a: CATH_1g51A03 (A:278-415)
2b: CATH_1g51B03 (B:1278-1415)
3a: CATH_1g51A01 (A:1-106)
3b: CATH_1g51B01 (B:1001-1106)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Thermus thermophilus. Organism_taxid: 274.
(3)
1a
1g51A02
A:137-277,A:416-580
1b
1g51B02
B:1137-1277,B:1416-1580
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
[code=3.30.1360.30, no name defined]
(7)
Thermus thermophilus. Organism_taxid: 274.
(2)
2a
1g51A03
A:278-415
2b
1g51B03
B:1278-1415
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Thermus thermophilus. Organism_taxid: 274.
(5)
3a
1g51A01
A:1-106
3b
1g51B01
B:1001-1106
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (209 KB)
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